Sequence
atgc intronic sequence ATGC exonic sequenceGAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatcaaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgcatattgcatgcaattgccaggagcaagtatgagctatcaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA06G10180.2 (Glycine max), 5'ss of exon 17
GAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatc---aaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgcatattgca-tgcaattgccaggagcaagtatgagctatcaaat
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GAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTGGTGATGCCAAGGGTATGGCCAGAGATGTTCATCGAACTCTTCATACCATTGTCCAGCAGCAGgtgctgattgtttttcatcatccctcccttttgcataatacttaatt--attgattttcaaagaacggaacccaactagtatgagaaaataagagaagcttt--
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 17
GAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatcaaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgca--tattgcatgcaattgccaggagcaagtatgagctatcaaat
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GAATTTGATTTCTCAGGGAGGTTATCTTTATGTTTGTGGTGATGCTAAGGGCATGGCCCGAGATGTTCATCGGACTCTTCATACCATTGTCCAGCAGCAGgtgctgatgcctaattgt-cttttttcatccctccctttcctcaaccctaaggcttggaagtgtccacttcggttataacttatatatatatatatatata-
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 17
GAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatcaaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgcatattgcatgcaattgccaggagcaagtatgagctatcaaat
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GAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTGGTGATGCCAAGGGTATGGCCAGAGATGTTCATCGAATTCTTCATACCATTGTCCAGCAGCAGgtgctgattgtttttcatcaccctcccttttgcataatacttaattattgattttcaaaatctgaacccaattagtatgagaaaataagagaagcttttc
upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 17
-GAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatcaaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgcatattgcatgcaattgccaggagcaagtatgagctatcaaat--
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GGAATTTGATTTCTCAGGGGGGTTATCTTTATGTTTGTG-TGATCCTAAGGGCATGGCCAGAGATGTTCATCGGACTCTTCTTACCATTGTCCAGCAGCAGgtactgatgcctaattgt-cttttttcatccctccctttccccaaccttggaagt-gtccatttcggttattcctcatcattttttacacacacacacacacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30125286|gb|CB910625.1|CB910625EST: GTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAG GANAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACA
genomic: GTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaacca ... taaattccagGAAAATGTGGAGTCATCCAAGGCGGAGGCTATAGTGAAGAAACTTCACACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATATAATCTCTCAGGGGGGATATCTTTATGTTTGTGGTGATGCCAAGGGTATGGCCAAAGATGTTCATCGAACTTTGCATACCATTGTCCAGGAGCAGgtatgaaccatcaaatatgctgtgtgcgtgtgtgtccttagactccattgaactttgcatattgcatgcaattgccaggagcaagtatgagctatcaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG