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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGGATCAAAGGTACAAGGAGTTGGGTATCAGGGATAAAATTACACTTAGCAGTGGGCGATTTCTTCTTGGCAACAGgtatgctttttctgcccttcaatgtgaattgtctactgtgcagtttctctgtttgtggaatattctcgtcttttttctttctaaaccattagtacatggt...

Basic information

species Vitis vinifera
transcript Vv17s0000g03970.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA07G09890.1 (Glycine max), 5'ss of exon 17
GAAAGGGATCAAAGGTACAAGGAGTTGGGTATCAGGGATAAAATTACACTTAGCAGTGGGCGATTTCTTCTTGGCAACAGgtatgctt-----tttctgcccttcaatgtgaattgtctactgtgcagtttctctgtttgtggaatattctcgtcttttttctttctaaaccattagtacatggt
|||||||||||||| ||||||||||||||  ||||||| | |||||||||||||||||| || ||||| |||||||||| ||||||||      ||||||  |    |    ||| || | ||  |   || |||  |  |  |||| | |  |   |  | |    |  |||||  |       
GAAAGGGATCAAAGATACAAGGAGTTGGGATTCAGGGACAGAATTACACTTAGCAGTGGACGTTTTCTCCTTGGCAACAAgtatgcttgaaggcttctgcaatattttagacattctccagtgctcctgttttcttctgcttaaataatttgttaactcgtttgataatcccattcttct-----

upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA09G31920.2 (Glycine max), 5'ss of exon 9
GAAAGGGATCAAAGGTACAAGGAGTTGGGTATCAGGGATAAAATTACACTTAGCAGTGGGCGATTTCTTCTTGGCAACAGgtatgctt-----tttctgcccttcaatgtgaattgtctactgtgcagtttctctgtttgtggaatattctcgtcttttttctttctaaaccattagtacatggt
|||||||||||||| ||||||||||| ||  ||||||| | ||||||||| |||||||| || ||||| ||||| |||| ||||||||      ||||||  |    |    ||| |  | ||  |   || |||  |  |  |||| | |  |      | |       |||||  |       
GAAAGGGATCAAAGATACAAGGAGTTAGGATTCAGGGACAGAATTACACTCAGCAGTGGACGTTTTCTCCTTGGGAACAAgtatgcttgaaggcttctgctatattttagacattcttcaatgctcctgttttcttctgcttaaataatttgttaacccgtttgatattcccattcttct-----