Sequence
atgc intronic sequence ATGC exonic sequenceAATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os01g67740.1 (Oryza sativa), 5'ss of exon 17
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattga---tactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag
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AATGACAAGTCAAAAATCAAGACAGTGATAGAAGAGTTGGATGAGAAGAAGAAAGAGACCTTGAAAGTCACATGGCTTAAAGTAAACAAgtcagtatat-gaatccttctttaacttgttattgtttccagtggctgcacttgctcagactctgtatcgcggcattacttttctttgtaacagacattggtaga--taacctctcctttccttttgtatag-------
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G006452_T01 (Zea mays), 5'ss of exon 11
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag--
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AATGACAAGGCAAAAATCAAGAAAGTGATAGAGGAGTTGGATGAGAAGAAGAAGGAAACATTGAAGGTCACTTGGCTCAAAGTAAACAAgtcagtatatca-atcct------ttagtgacttgttatatatcctgc--agatgaactgtccctttaaatattgctgaaatgtctcttactcataagtgtgaaattggatcctaactcctacattctgtttctatag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 18
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtc-----tattgcatcatgctagattacatggttcttttaattgatact------aaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag
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AATGACAAGTCTAAAATCAAGATGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGATCAAAGTGAATAAgtgagttattattattattttctttaatgtaatttgatccgttcaatttatacttgttggatatgaaaccattttttcgcatgataactttctgcttttt-----------------------------------------------
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA13G27210.1 (Glycine max), 5'ss of exon 18
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatg-aagcttactattcataattttgtgtctcgttttcag
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AATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTTAATGTTACCTGGATCAAAGTGAATAAgtgagt-tatttaattatttttattttaatg--taatttgatc--cactcaattta--tgcttgtt-ggatatgaaaccat----ttgtaagccttcgtgtataattacttt-------------------------
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G47460.1 (Arabidopsis thaliana), 5'ss of exon 17
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag
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ACTGACAAATCAAAAATCAAGAAAGTTATTGAGGAGCTTGATGAGAAGAAAAAAGAAACACTGAAAGTTACATGGGTTAAAGTTAACCAgtgagtt---------------gcttatttagtttctttacttaaccatgtgattcacttctctttacgatatttaaagttggatccttatcgttag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122692151|gb|EC993608.1|EC993608EST: GATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAA GGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCT
genomic: GATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctat ... tcgttttcagGGACTTTGGATCCATCTTTTCTACTCTATTACCAGGCACAATGGCAAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAGAAGGAAACATTAAAGGTTACTTGGACTAAAGTTAACAAgtgagtctattgcatcatgctagattacatggttcttttaattgatactaaaattaatcatttatttggttattgatctttgattttatagaacttgatgaagcttactattcataattttgtgtctcgttttcag
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA