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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatcaacgctttcatactaactcctggaaatgaaaaaaaaaaaatgtctgcatctataatag

Basic information

species Vitis vinifera
transcript Vv15s0021g02450.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 12
GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatca-acgctttcatactaactcctggaaatgaaaaaaaaaaaatgtctgcatctataatag
| ||| ||||  ||| ||| || ||||| |||||||| |||||||| ||  ||||||  |||||||||||||||||  ||||| ||||||||||||| ||||||| | |||| |    | |  ||   || |  |   |   ||||| |   | ||   || || |     | ||    | |  |          
GTTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAgtgagag-ttctttacttttttaactggatattgtggtaaattttcaga---attctctgacat-agttttataactcatataaag---------

upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 16
GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatcaacgctttcatactaactcctggaaatgaaaaaaaaaaaatgtctgcatctataatag
| ||||||||||| | ||| |||||  | |||||||| ||||| || || |||||||  |||||||| ||||||||||||||| ||||||||||||| |||| |   ||   |  |     |     ||    | ||   |||||    |  |   |    || | ||   |||  ||| |  || |       
GTTATACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTCGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaactctaaaaactctaaaccctttaacaataccatttctttctccttgtcctattagtataataagtcaaacttgtttcaatttcag----

upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 16
GCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATAAgtgagtgcttctatttactctctaccaaatgtcatcaacgctttcatactaactcctggaaatgaaaaaaaaaaaatgt-ctgcatctataatag
| || |||||||| | ||| |||||  | |||||||| ||||| || || |||||||  |||||||| ||||||||||||||| ||||||||||||| |||| |     ||||   || || || ||  || | |      ||| |  |  | || ||  | |  || ||    ||  |  | ||| |  |    
GTTACACAGCAGCTAGACCGGTGATTCTAGAACCTGTTATGCTGGTTGAGTTGAAAGTACCAACAGAGTTTCAGGGCACTGTTGCTGGTGACATCAACAAgtaaac---tctaaa-accctttaaca--tgccctt-----ttttactcctattcatgttagtataataactccaacttgtttcattttcag---