Sequence
atgc intronic sequence ATGC exonic sequenceAAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatttcttgtattgcttatcaaatacacatatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 5'ss of exon 17
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatttcttgtattgcttatcaaatacac-atatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
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AAATGAATTACACCTCTGAGGATCAACCATATCCTCGTGGAGAAATTTGTGTTAGGGGAACTACGATATTTTTTGGTTACTATAAGGATGAAATCCAAACgtaacgtatcttgctatgtatttctgtctcctatttaagttcaaatatattaaatgagtttcagaaattacatttgaaaacatgcag-----------------------------
upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os12g04990.3 (Oryza sativa), 5'ss of exon 16
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatttcttgtattgcttatcaaatacacatatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
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AAATGAATTACACCTCTGAGGATGAACCATATCCTCGTGGAGAAATCTGTGTTAGGGGACCTACGATATTCTGTGGTTACTATAAAGACGAAATCCAAACgtaatttgctat---atatttctat--cttctactattta---aattcataaatatttgatgagtttcagcaat---taaatttgaaaacctgcag-------------------
upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G27600.1 (Arabidopsis thaliana), 5'ss of exon 17
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatttcttgtattgcttatcaaatacacatatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
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AAATGAATTACACATCAGACGATCAACCATACCCACGTGGTGAAATCTGTGTAAGAGGACCAATCATCTTCAAAGGCTACTACAAAGATGAAGAACAAACgtaacacattttccagtatcattagtggctctagttatatgtatagataagtggacatgagtcttgacacatttacttgagcag-------------------------------
upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: PP1S33_126V6.1 (Physcomitrella patens), 5'ss of exon 20
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctat-----ttcttgta-ttgcttat---caaatacacatatttcttgcaattgtcact-catgtgtaaataatggatctacctgactccagttactttgacag------------------------------------------------
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AGATGGAATATACAAATTACGACAAGCCTTACCCGCGAGGGGAGATCTGTGTTCGAGGCCCTACCCTCTTCAAAGGCTACTACAAAGATGAAGTTCAAACgta-tcactcgtgttctctttccacatatctttctatacttggctatacccaatcgcaaatgccttttttcattttaagtgtgaaagataatagagcaatcacttgggctgtaaaatttctacccagtacgtttcaaatggaagctgactttcacatctatttttcattgcag
upper sequence: Vv14s0128g00720.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: PP1S408_23V6.1 (Physcomitrella patens), 5'ss of exon 19
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatt-tcttg-tattgcttatcaaatacacatatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
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AGATGGAATACACTAACGACGACAAACCTTACCCGCGAGGAGAAATCTGTGTTCGAGGCCCCACATTGTTCAAAGGCTACTACAAAGATGAAGTTCAAACgtactcctcttgctctttttcttcctgccttgctcttgcttacttgctacccatgacattttgaaaggaagttg--gcgttcacagttgactt---ttattgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71872136|gb|DT021191.1|DT021191EST: GTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGAC GAAGGAAGTAATTGATGGAGATGGTTGGCTGCATACAGGAGACATTGNGTT
genomic: GTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaact ... actttgacagGAAGGAAGTAATTGATGGAGATGGTTGGCTGCATACAGGAGACATTGGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGAATTACACCTCTGAGGATCAGCCCTATCCTCGCGGTGAAATATGTGTCAGGGGTCCCGTTCTCTTCCAAGGCTACTACAAAGATGAAGTCCAGACgtactcaactttcttatatttctatttcttgtattgcttatcaaatacacatatttcttgcaattgtcactcatgtgtaaataatggatctacctgactccagttactttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG