Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTTCACATCTCCTTCTAGATTTGTTCGACCAGTTAGAAATATTTCTATTCCTTCTGAGGAAGGTCATGATATTGAACTCATTGGGCCTTTTGAACAGgtgagtccaggttttccacacatttcttttgtttttacaatcatattttgacctttgctgttttagcaaatctgttattagatgtagttgctggatgccaaatacgagctgctgattgatttatatttgtcatcctag

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA13G26190.1 (Glycine max), 5'ss of exon 21
CCTGTTCACATCTCCTTCTAGATTTGTTCGACCAGTTAGAAATATTTCTATTCCTTCTGAGGAAGGTCATGATATTGAACTCATTGGGCCTTTTGAACAGgtgagtccaggttttccacacatttcttttgtttttacaatcatattttgacctttgctgttttag-caaatctgttatt--agatgtagttgctggatgccaaata-----cgagctgctgattgatttatatttgtcatcctag
||||| |||||| ||||||||||||||||| |||||||||||||| || ||| |||| || | | || |  | || |||||||||||||| ||||| ||||| | |  || |||| |      |||| |   || || | |  | ||| ||  | | ||  |  || || |||| |  ||  |||  |   || |     |  |  |     | |  |  | | || | | ||||| || |   ||
CCTGTGCACATCCCCTTCTAGATTTGTTCGGCCAGTTAGAAATATATCAATTGCTTCCGATGGAAGTGAAAACATAGAACTCATTGGGCCATTTGAGCAGgtcattatagatttttc------ttctgtatgttgtatact--tgtttggagttattctaataaaggcatatctatctttatagagatgagtgatatgaacttaggatttgtcaaatttttaagtgttatgtatttttcttatcag

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA17G23500.1 (Glycine max), 5'ss of exon 12
CCTGTTCACATCTCCTTCTAGATTTGTTCGACCAGTTAGAAATATTTCTATTCCTTCTGAGGAAGGTCATGATATTGAACTCATTGGGCCTTTTGAACAGgtgagtccaggttttccacacatttcttttgttt-ttacaatcatattttgacctttgctgttttag-caaatctgttattagatgtagttgctggatgccaaata-----cgagctgctgattgatttatatttgtcatcctag
||||| |||||| ||||| ||||||||||| ||||| |||||||| || ||||||||  | | | || |  | |||||| |||||||||| ||||| ||||| | |  || ||||         |||||||| | ||  |  | | ||| || || | ||  |  || ||  | | ||  ||||  |   ||||     |  |  |     | |  |  | | || ||| ||| | || |   ||
CCTGTGCACATCCCCTTCAAGATTTGTTCGGCCAGTAAGAAATATATCAATTCCTTCCAATGGAAGTGAAAACATTGAATTCATTGGGCCATTTGAGCAGgtcattatagatttt---------tcttttgtatgttgtatacttgtttggagctattctaataaaggcacctatctttatagagatgagtgctatgaacttaggatttgtcaaatttttaagtgttttgtatgtttcttatcag