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GATTCTAGTATTAACCCAATTGATGTTCCAAGAGCATGGATATGGAACCTCCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaataaaatacatatatactgtatgctaatttagaaatcgtagtaaggaggtagaggagaaagaattaacaaaatgattcctatgtttattag
species | Vitis vinifera |
transcript | Vv13s0074g00450.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAG GCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAGEST: gi|110386925|gb|EC951560.1|EC951560
genomic: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaat ... tgtttattagGCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAG
EST: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAG GCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAGEST: gi|110428380|gb|EC994850.1|EC994850
genomic: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaat ... tgtttattagGCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAG
EST: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAG GCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAGEST: gi|110419355|gb|EC985574.1|EC985574
genomic: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaat ... tgtttattagGCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAG
EST: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAG GCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAG
genomic: CCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaat ... tgtttattagGCTTGCCAACAGAGGGAATCCAATACTGCTTCTGGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTAGTATTAACCCAATTGATGTTCCAAGAGCATGGATATGGAACCTCCCAAGAAGAACCGTGTACTTTGGAACCTCTGTGACCTCAATATTTAGAGgtaaaagaataaaatacatatatactgtatgctaatttagaaatcgtagtaaggaggtagaggagaaagaattaacaaaatgattcctatgtttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC