Sequence
atgc intronic sequence ATGC exonic sequenceATAATAACCACCTTCAGTGTAGTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAGgtctggtgttctggttatgtcattatgtatttcttttcctaaacagtattacttcttgctttgtgtagatctattccaacattttgacccctcttaatccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g03850.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA10G43840.1 (Glycine max), 5'ss of exon 17
ATAATAACCACCTTCAGTGTAGTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAGgtctggtgt--tctggttatgtcattatgtatttcttttcctaaacagtattacttcttgctttgtgtagatctattccaacattttgacccctcttaatccag
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ATTATTACTACCTTCAGTGTAGTGGATAACATGAAACAACAGTTTTATGCTCAACACGGGAAAATTTCCAGgttttgtattttctttctagataactttatgggggctttactaatttgtga-attggacagttggttgatacaagttcaaaataaatataatttctaaatc---
upper sequence: Vv13s0067g03850.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA20G38530.1 (Glycine max), 5'ss of exon 17
ATAATAACCACCTTCAGTGTAGTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAGgtctggtgttctggtt----atgtcattatgtatttcttttcctaaacagta---ttacttcttgctttgtgtagatctattccaacattttgacccctcttaatccag
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ATTATTACCACCTTCAGTGTAGTGGATAACATAAAACAGCAGTTTTATGCTCAACAGGGGAGAATTTCCAGgttttgtattttctttctagataactttatggggttgctttattaacttgagaatttgacagttagttggttcaaaataaatataatttgtaaatcctgc---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71868884|gb|DT017939.1|DT017939EST: GTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAG AAAAAATGATCCAAGGGTGAAGGGGCTGTTTGATGATCTTGAGAAGTTAAG
genomic: GTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAGgtctggtgtt ... cttaatccagAAAAAATGATCCAAGGGTGAAGGGGCTGTTTGATGATCTTGAGAAGTTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAATAACCACCTTCAGTGTAGTTGATAACATGAAAGAGCAATTTTATGCTCAACAAGGGAAAATTTCCAGgtctggtgttctggttatgtcattatgtatttcttttcctaaacagtattacttcttgctttgtgtagatctattccaacattttgacccctcttaatccag
- - - - - - - - - - - - - - - - - AGAGCA