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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaatgaagtttctgtttttcttttccagaaagtgtagtttaaatattcccttgaagctctttctttatgttgcag

Basic information

species Vitis vinifera
transcript Vv13s0067g01920.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 15
TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaatgaagt-ttctgtttttcttttccagaaagtgtagtttaaatat--tcccttgaagctctttctttatgt-tgcag--------------------
| |||| |||||||| |||||||| ||| | || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| || | || |  || |       |     | | |  |  ||||  |||||  |     | |   ||  | | ||                     
TGGTGAGATAAGCAAACAAAGACTAGATAGGGCAATTCTTACTTTCTTTCAGCATTTCCGAAAGTCTTATGTAGGAGATCAGGCTATTCATTCTTCCAAGgtaataaaatattataattattgagaataatccattttgcatggatatgatccctgtacatagtatgggtacatgtacaaaatatgacaaatttaaaaaa

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 9
TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaatgaagt-ttctgtttttcttttccagaaagtgtagtttaaatat--tcccttgaagctctttctttatgt-tgcag--------------------
| |||| |||||||| |||||||| ||| | || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| || | || |   | |       |     | | |  |  ||||  |||||  | |   | |   ||  | | ||                     
TGGTGAGATAAGCAAACAAAGACTAGATAGGGCAATTCTTACTTTCTTTCAGCATTTCCGAAAGTCTTATGTAGGAGATCAGGCTATTCATTCTTCCAAGgtaataaaatattttaactattgagaataagccattttgcatggatatgatccctgtacgtagtatgggtacatgtacaaaatatgacaaatttaaaaaa

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G06120.2 (Arabidopsis thaliana), 5'ss of exon 17
TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaa-tgaagtttctgtttttcttttccagaaagtgtagtttaaatattcccttgaagctctttctttatgttgcag
| |||||||||| || ||||| || |||||||||||||| || ||||| ||  |||| || |||||||| || || ||||||||||||||||| || || |||| || |    |||||| | ||||  |     | |  | ||  |||     |||  ||    |||| ||||||||
TGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCATCAAAAgtaaatgcaaaccctgtttcttttttttattgtatttgttctatgtatatttctgatactac--ctttctgttgcag

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 17
TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaa-tgaagtttctgtttttcttttccagaaagtgtagtttaaatattcccttgaagctctttctttatgttgcag---
| |||||||||| || ||||| || |||||||||||||| || ||||| ||  |||| || |||||||| || || ||||||||||||||||| || || |||| || |    |||||| | ||||  |     | |  | ||  |||     |||  ||    |||| ||||||||   
TGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCATCAAAAgtaaatgcaaaccctgtttcttttttttattgtatttgttctatgtatatttctgatactac--ctttctgttgcagcag