Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 17
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
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TGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGGCCTTTATGTGCGAGCTTTGCAAgtaag---gactctccaaatgtgttttattct----tgcactttctctatgttaatcttaaa---atcaaac-ccttaattgattgcattattcttggtgcag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 16
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
||| ||||| || || || ||||| ||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||| | || || | || || ||| ||||||| | | | ||| ||||| | || ||| | | || ||| | ||| ||| ||||||
TGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAgtaa---tgactcaccaaatgtgttttattat---tactggttttcttatt-taacccaaaagccttctcttttactgattaca----ctatttttggtgcag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 17
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
||| ||||| ||||| || ||||| ||||| ||||||||||| ||||| || |||||||||||||| |||||||| || |||||||||||||| | || || | | ||| ||| ||||||| | || || | ||| | | ||| | | || ||| | | || |||| || ||||||
TGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTTGCGAAAAAGCGGGCCTTTATGTGCGAGCTTTGCAAgtaag---gactctccaaatgtgttttattct----cgcactttctctatgttagtcttaaa---gtcaaaccctttgttgattgca-ttattcttggtgcag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 16
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
||| ||||| || || || ||||| ||||| ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||| | | || || | || || ||| ||||||| | | | ||| ||||| | || || | | ||| ||| | |||| ||| ||||||
TGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGATCTTTGCAAgtaa---tgactcaccaaatgtgttttattct---tactggttttcttatt-taacccaaaggccttctcttttattgattaca----ttatttttggtgcag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 17
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
|| ||||| || ||||||||||||||||| ||||||||||| || || || |||| |||||||||||||| ||||| ||||| | | | | | |||| || |||| || | | |||| || ||| || | | || || || | ||| || ||| | |||||||||
GGCTGATGCAATCTTAGCAAATGGGATGTTCAGCCATTATGACCGGCCTCGTGTTGCTCAGCTTTGTGAAAAGGCTGGACTTTACATCCAATCTTTAAAGgtt-------tttgctcaatgtcttctttaatattcttggccta----atagatgtatt---tttttttcccctctaacttcgtttccttttgctttgtgcag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 17
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
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GGCTGATGCGGTATTAGCAAATGGGATGTTCACCCACTATGACCGGCCTCGCATTGCTCAACTTTGTGAAAAGGCTGGACTTTATATCCAATCCTTGAAGgt-----tggtacatg--------ttttttaccatttttaccggccaaatagatttatcatctt--ctcaccttccaacttcttttccttttgatttgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689653|gb|EC942290.1|EC942290EST: GGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAG CATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCA
genomic: GGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattgg ... ttttgtgcagCATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGATGCTATATTAGCAAATGGGATGTTTAGCCATTATGATCGTCCACGGATTGCCCAGCTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCCCTTCAGgtgaaattggttcttgcaattcattttattttattttttaccttttttattgttacatgaaattaattatacgtcttggttaaaacacttatattttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG