Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatattttgcactgacaatatgagaactccatag

Basic information

species Vitis vinifera
transcript Vv13s0019g04370.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 17
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccccttt----caagtgtcacgttaag--ttataattaccagatattttgcactgacaatatgagaactccatag
||  ||| ||| || | ||| || |||||| |  |  |  | ||||| |||||||| ||||||||||||||||| |||||      ||||||     |  ||  |    |||  ||  ||| | |   |    ||   ||  || ||| | | | || ||
GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgccctatctgaaatcccaagccttccaatcatccatttaactgacatgtgaacatgtgca-tgcacag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 16
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatattttgcactgaca--atatgagaactccatag
||  | | ||| || | ||| || |||||| | || || ||||| || ||||| |||||||||||||| ||||||||||||   | | |||   | |  | |  | | |  |||| |  ||  |||| | | | |    || || | |  | | ||
GTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgta--gttctcttc--acttcctctctcaatcctaatga--aggcatttcggagtcatgtgatgtgcgcatgctacag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G069676_T01 (Zea mays), 5'ss of exon 1
----------------------GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatattttgcactgaca--atatgagaactccatag
                      ||  | | ||| || | ||| || |||||| | || || ||||| || ||||| |||||||||||||| ||||||||||||   | | |||   | |  | |  | | |  |||| |  ||  |||| | | | |    || || | |  | | ||
TTTTATGGCATACCATACACAGGTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgta--gttctcttc--acttcctctctcaatcctaatga--aggcatttcggagtcatgtgatgtgcgcatgctacag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA10G35490.2 (Glycine max), 5'ss of exon 16
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatatt----ttgcactgacaatatgagaactccatag--------------
|| |||| |||||||| ||| |||||||||||||| ||| | || || ||||| ||||| ||||||||||||||||||||| |  |||   ||| |  |   |||  | | |   ||    |||||         |     ||      |||  | |               
GTCCGAGTTTCTGGCTATGGTGGATGGTTCCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggccc---tcacggctagtgttggggtgtttatatgcaatattaaaacaatgcaactgattcagagactgaacatacttgttactgtag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA20G32030.1 (Glycine max), 5'ss of exon 16
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccccttt--caagtgtc---------acgttaagttataattac-cagatattttgcactgacaatatgagaactccatag
|| |||| |||||||| ||| |||||||| ||||| ||| | || || ||||| ||||| ||||||||||||||||||||| |   ||      | |||||          | |  |  ||| ||  |  ||  |  ||   |||||  |||   |    |  |||
GTCCGAGTTTCTGGCTATGGTGGATGGTTTCTTCTTAGATTATCACTCCATGATCCTGTACTTCCCCTTAACATTGAGgtaaaggtcctcacagctagtgttggtgtttttatgcaatattaaaacaatgcaactgattcagactgatcatacttgt-tactgtag

upper sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G17530.1 (Arabidopsis thaliana), 5'ss of exon 18
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatcccctttcaagtgtcacgttaagttataattaccagatattttgcactgacaatatga--gaactccatag
 | || | ||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||||||||||||| |||||| |      | | |||  | || |  ||||  | |  | | |  |||  | |  |   |   |  | || |     
ATCCGCGTTTCGGGCTTTGGTGGATGGTTTCTTCTCAGACTTTCTCTCCATGATCCTGTTCTTCCCCTTAACATCGAGgtaaacatatgtataaagcttaactt--agtttcagtatctaaac-tttcactcgaatttttcaattggacgcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715514|gb|EE093651.1|EE093651
EST:     TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG                         GCGCCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT
genomic: TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccc ... aactccatagGCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT
EST: gi|110364954|gb|EC928584.1|EC928584
EST:     TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG                         GCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT
genomic: TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccc ... aactccatagGCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT
EST: gi|30298937|gb|CB975731.1|CB975731
EST:     TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG                         GCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT
genomic: TCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccc ... aactccatagGCACCAAGCCATGATGATGCTGTGAAACTTGGACTTGCTGTTCTCACTGTT