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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTACACTGGTAGCTTTGCAGGATGTTTCACTGGACAAGATATTTGATGAGGCTGGTCGGAAGGCATTATGTAATGTCGTTCCCCAGGTTATGCAGCAGgtaattttggttggtaaataattctgataaccggataacttgacatttgtcgctttcagttattattttaggcaacatcctcttgtatcaagaaaaagactaattgattcaagggaggataaaccagaggtgttaatgaatgttctatgttgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04320.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04320.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os10g33960.2 (Oryza sativa), 5'ss of exon 17
GACTACACTGGTAGCTTTGCAGGATGTTTCACTGGACAAGATATTTGATGAGGCTGGTCGGAAGGCATTATGTAATGTCGTTCCCCAGGTTATGCAGCAGgta-attttggttggtaaataattctgataaccggataacttgacatttgtcgctttcagttattattttaggcaacatcctcttgtatcaagaaaaagactaattgattcaagggaggataaaccagaggtgttaatg-aatgttctatgttgcag
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AACATCTCTCGTCGCTCTCCAAGATCTCTCACTGGACAAGATATTTGATGAAGCCGGTAGGAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGgtagagagccacttgcaaa--atccccattttcttttccccatgtaataacagcaatgtcctaac-cgctaaacacaaaccaa--gtagagatgcaagaactcaccgtagccacagag--taatctttcgatttcgattcaatctgttcttgttcag