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GAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTGGTGATGCCAAAGGCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcatacaaataaaatcaacatccctgaatcgacaaatggctgcctctacctaccttgatgaaatcatcatacctaatgtttaccaccacccatt...
species | Vitis vinifera |
transcript | Vv11s0052g00880.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTCCCAGGCTGAGAGCAEST: gi|32270252|gb|CD719411.1|CD719411
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCA
EST: GCATGACAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACEST: gi|56409444|gb|CX017696.1|CX017696
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGAC
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATGEST: gi|30326071|gb|CD009333.1|CD009333
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTEST: gi|352774216|gb|FQ474739.1|FQ474739
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCT
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATGEST: gi|110699884|gb|EE077290.1|EE077290
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATAACATCTTGCAAGAGCAG GGGTCTCTAGACAGCTCCCAGGCTGAGAGCATGGTGAAAAATCTGCCAATGEST: gi|30322494|gb|CD005756.1|CD005756
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATGEST: gi|32271899|gb|CD721058.1|CD721058
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
EST: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAG GGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
genomic: GCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcat ... ttgatttcagGGATCTCTAGACAGCTCCAAGGCTGAGAGCATGGTGAAGAATCTGCAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTGGTGATGCCAAAGGCATGGCAAGGGATGTCCACAGAACTCTTCATACCATCTTGCAAGAGCAGgtacgttcatacaaataaaatcaacatccctgaatcgacaaatggctgcctctacctaccttgatgaaatcatcatacctaatgtttaccaccacccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccac