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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGTCAGCCACCGGTTTATCCTGGTTTGTCCACTGTGTGGGGAAGCTTAGCTCGCAGTAAGgttagcctgttccatggttcatcattgtttgtcaagattgctggtgtcctatgcttgtcacaaatattatatttaactgtgtgcactttgctgtctctca...

Basic information

species Vitis vinifera
transcript Vv11s0016g00100.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00100.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G462803_T02 (Zea mays), 5'ss of exon 17
GGTTAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGTCAGCCACCGGTTTATCCTGGTTTGTCCACTGTGTGGGGAAGCTTAGCTCGCAGTAAGgttagcctg--ttccatggttcatcattgtttgtcaagattgctggtgtcctatgcttgtcacaaatattatatttaactgtgtgca-ctttgctgtctctca
  |||| |||||||||| ||||||||||||||| || ||||| ||  |||| || ||||||||| |||| ||||| ||||||||  | ||| | |||||||||||||||  |||  | ||       | | ||| |  ||   || ||| ||  |  | |||| ||||  || ||| |||   |  | | ||| ||    |  
TATTAATTATGTTGATTTTGCTTTTGATGACTTCGGCGGTCGGCAAGCACCTGTGTATCCTGGTCTGTCTACTGTTTGGGGAAGTCTTGCTAGGAGTAAGgttagcctggattctctagtctga-gctatctgttattatgtttgttgtgcttggtctatcactaatac-atcttttacttcctatatccttgttggtagtg-

upper sequence: Vv11s0016g00100.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G559436_T01 (Zea mays), 5'ss of exon 4
GGTTAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGTCAGCCACCGGTTTATCCTGGTTTGTCCACTGTGTGGGGAAGCTTAGCTCGCAGTAAGgttagcctgttccatggttcatcattgtttgtcaagattgctggtgtcctatgcttgtcac----aaatattatatttaactgtgtgcactttgctgtctctca--
  ||||||||||||||| |||||| |||||||| || | ||| ||  | || || ||||||||| || | ||||| ||||||||  | ||||| |||||||||||||||      | |||    ||||  |  |      | | |     || | || |||     | | ||  |   |||| ||  ||||   ||   ||  |  
TATTAACTATGTTGATTTTGCTTTCGATGACTTCGGTGATCGGCAAGCCCCTGTGTATCCTGGTCTGACTACTGTTTGGGGAAGTCTTGCTCGGAGTAAGgttagcctg------gattctctgttgtgagctactccctccgttcataaatacatgacaccgttgactttttaaaaaaactttgaccactcgtctcattcaaaaa

upper sequence: Vv11s0016g00100.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT4G16340.1 (Arabidopsis thaliana), 5'ss of exon 17
GGTTAACTATGTTGATTATGCTTTTGATGACTTTGGGGGTCGTCAGCCACCGGTTTATCCTGGTTTGTCCACTGTGTGGGGAAGCTTAGCTCGCAGTAAGgt-tagcctgttc-catggttc-------atcatt-gtttgtcaagattgctg-gtgtcctatgcttgtcacaaatattatatttaactgtgtgcactttgc-tgtctctca---------------------------------------------------------------------
||| | ||||||||||||| |||||||||| ||||| ||   ||| ||||||||||||||||| ||  | |||||||||||||| |||||| | || |||||  |   ||  | | | ||         |  | | | || ||    ||     |||   |||  ||||   | |  |||||   ||   || ||| | | | |||  ||                                                                       
GGTCACCTATGTTGATTATTCTTTTGATGATTTTGGAGGCAATCAACCACCGGTTTATCCTGGATTAGCAACTGTGTGGGGAAGTTTAGCTAGAAGCAAGgtacaaattgcacacgttgtctggatgaaactactagcttatctttgttctaatgtgatatatatttgtattatac-ttataaacaaagttgagcaatctccgtgttactgttcagctatctgctttgaattttcttaattatttctcttttgttgatgaacactattactggccttgcag