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ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaagaagttttatacccttaaatggaacgtttctcacctcctttcccctaggctctagagttatgtgaccgccatgatgtggaaaaaccttcc...
species | Vitis vinifera |
transcript | Vv10s0003g04630.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ACTCATGGCCAACTTGAACGGGATGATGAG GATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGAEST: gi|110698945|gb|EE077019.1|EE077019
genomic: ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaa ... ttcttggcagGATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGA
EST: ACTCATGGCCAACTTGAACGGGATGATGAG GATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGAEST: gi|30321558|gb|CD004820.1|CD004820
genomic: ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaa ... ttcttggcagGATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGA
EST: ACTCATGGCCAACTTGAACGGGATGATGAG GATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGAEST: gi|30134857|gb|CB920195.1|CB920195
genomic: ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaa ... ttcttggcagGATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGA
EST: ACTCATGGCCAACTTGAACGGGATGATGAG GATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGA
genomic: ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaa ... ttcttggcagGATGTCTACTTTGATGATGAATCGGCTGAAGTTGTCATATCTTCTCTGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCATGGCCAACTTGAACGGGATGATGAGgtatgttcaagaagttttatacccttaaatggaacgtttctcacctcctttcccctaggctctagagttatgtgaccgccatgatgtggaaaaaccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa