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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttctgagatggtgaagttttgggctttgagctgacatatatggctatatgagcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03640.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 19
ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttctgagatggtgaagttttgggctt--tgagctgacatatatggcta--tatgagcag
| |||||||| ||||||||| |||| || ||||| || || |||||  || ||||| ||||||| ||||||||| ||||||||||||||||  |||| ||||||||| || | | |      |||  |    | |   | ||   || | ||    | |   | | || |||||  |   |   |||||  ||
ACAACCCAGCTACATGGATGTTGGAGGTAAGCTCTATGGCAGCTGAAGTTCGGCTTCAAATGGATTTTGCTGAGTACTACAAATCATCATCTTTGTATCAgtaagtctaa-cgtctagg---atactattgctgtcaagtgagtttgcatttactagttgggtaatctaacatacgtaaatgcttatgactag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 19
ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttc--tgagatggtgaagttttgg-gctttgagctgacatatatggctatatgagcag
| |||||||||||||||||||| |||||||| ||  | || |||||  || | |||| |||||||||||||||  |||||||| |||||||  ||| ||||||||||||   | | |   | ||  | | ||| ||   || | | |     |||||  | |||||||| |||  ||||  |||   | |||
ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTGTTCCAgtaagtcaagtaacaattaga-atgcctacattgttaaatgggtttgcatgattttgttggtttgagctaacacgtatgcttat-caaacag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 20
ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatata-tcaaaattcttc--tgagatggtgaagttttgggc-tttgagctgacatatatggctatatgagcag
| |||||||||||||||||||| |||||||| ||  | || |||||  || | |||| |||||||||||||||  |||||||| |||||||  | | ||||||||||||  | ||  | || | |  | | ||| ||   || | | |     |||||  | |||||||| |||  |||| || |   | |||
ACAACCCAGCAACATGGATGCTAGAAGTGAGTTCTGTAGCAGCTGAAGTTCGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCAgtaagtcaa--cttacaattagaaagcctacattgttaaatgggtttgcatgattttgttcgtttgagctaacacgtatg-ctttccaaacag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 18
ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttctgagatggtgaagttttgggct---ttgagctgacatatatggcta--tatgagcag
| |||||||| ||||||||| | || || ||||| || || |||||  || | |||  |||||| ||||||||||||||||||||||||||  |||| ||||||||| || | | |      |||  |   || |   | ||   || | ||    | |   || |||| ||||| ||   |   |||||  ||
ACAACCCAGCTACATGGATGTTAGAGGTTAGCTCTATAGCAGCTGAAGTTCGACTTCGAATGGATTTTGCTGAGCACTACAAATCATCATCTTTGTATCAgtaagtctaa-cgtctagg---atactattgttgtcaagtgagtttgcatttactagttgggttaagctaacatacatatatgcttatgactag

upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G16340.1 (Arabidopsis thaliana), 5'ss of exon 15
ATAACCCAGCAACATGGATGCTGGAAGTGAGCTCAATTGCTGCTGAGATTAGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaaacatattactatatatcaaaattcttctgagatggtgaagttttgggctttgagctgacatatatggctatatgagcag
|||| || || ||||||||||| |||||||||||||| ||||| ||   || |||||| || || ||||||||||| || ||| |||||||| | || ||||||||  || | || || |  |    || ||  |||  ||||  |  |  |      || ||  ||   |   ||| | ||       
ATAATCCGGCGACATGGATGCTAGAAGTGAGCTCAATGGCTGCAGAAGCTAAGCTTGAGATAGATTTTGCTGAGCATTATAAAACATCATCCTTATATCAgtaagttcaacc-taatattcaaagctaagatcattcc-agatattttaactcaa---ttagaattg---ttcgtgg-tgtag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721191|gb|FC070409.1|FC070409
EST:     AGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCA                         GAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAA
genomic: AGGCTTGAAATGGACTTTGCTGAGCACTACAAATCATCATCCCTGTACCAgtaagtcaaa ... atatgagcagGAGAAACAAGGCTCTGGTGAAGGAGTTGAGCACCCCACCACCAGGGGCAAA