Sequence
atgc intronic sequence ATGC exonic sequenceTTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttctttttctgtttactaatatttaagtagatttcatattgaatgtgctgatcgcatcctgaggtctacagcatagataatggcatgatttcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 17
--TTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttctttttctgtt--tactaatatttaagtagatttcatattgaatgtgctgatcgcatcctgaggtctacagcatagataatggc-atgatttcag
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TAAATCCAATTGCTAAATGGGACATAAAG--GGTACACAAACAGCATTGCTGCAACCTTTCTCTCCTATAGTGATAGCTGCAGATGAGAATGAACGTATCAGgtatttgaagttaatcaatagtattattacttaaattg---tgactgttaaaaagctgggcatggctttagacaaaggttgatggtgctttttgtgtttagag
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 17
--TTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttctttttctgtttactaatatttaagtagatttcatattg--aatgtgctgatcgcatcctgaggtctacagcatagataatggcatgatttcag--
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CAAATCCAATTGCTAAATGGGACATAAAG--GGTACACAAACAGCATTGCTGCAACCTTTCTCTCCTATAGTGATAGCTGCTGATGAGAATGAACGTATCAGgtat----ttgaagttaatcaatactattttagttaaattgtgactatcaagaagctgggcatggctttagacaaaggttgatggtgcttttgtgttcagagaa
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 17
TTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttctttt-tctgtttactaatatttaagtagatttcatattgaatgtgctgatcgcatcctgaggtctacagcatagataatggcatgatttcag-
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TTGCCAACTGGGATACAAGGTTTGAAACGGGAACAAAGACAGCCCTCCTTCACCCATTCTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcgagtttcatcagagcatcgttaa--aattgaatgttagaacaacttcttgcattcaggttaaccctctgttaggaaaagtacagggtagttcccaa
upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 17
TTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgc---ttctttttctgtttactaatatttaagtagatttcatattga--atgtgctgatcgcatcctg--aggtctacagcatagataatggcatgatttcag
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TTGCTAATTGGGATACAAAGTTTGAAACGGGAACAAAGACGGCCCTCCTTCACCCTTTTTCTCCTATTGTAGTTGCTGCCGATGAGAATGAACGGATTAGgtatgcaaaaatttcttaccttaactaaaatt---atagacttcaaaccaacaatatgtaatccggttggcggtagccctgtaaggccaaatacaagctaatt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860965|gb|DT010020.1|DT010020EST: CAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAGTGAACGGATCAG GATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAA
genomic: CAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttct ... tgtttttcagGATTTGGAATTATGATGAAGCTACCCTTCTCAACAGCTTTGACAATCATAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCTAGCTGGGATACAAGATTTGAGGCAGGGGCAAAAACAGCTTTGCTGCAACCTTTTTCTCCTATTGTAGTTGCTGCAGACGAGAATGAACGGATCAGgtatgcttctttttctgtttactaatatttaagtagatttcatattgaatgtgctgatcgcatcctgaggtctacagcatagataatggcatgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaga