Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGAAATGCAGAGCCACATAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactattacaacaaatacccctagtttataattctttgttgatcttgttttgctatcaaagtcttatcaggaacatatgtttttttaatttcaccttcttaaagagcttagcctgaatcttttaattttgcag

Basic information

species Vitis vinifera
transcript Vv07s0130g00420.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 17
ATTCTGAAATGCAGAGCCACATAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactattacaacaaatacccctagtttataattctttgttgatcttgttttgctatcaaagtcttatcaggaacatatgtttttttaatttcaccttcttaaagagcttagcctgaatcttttaattttgcag
|| | || ||||||||| | ||||||||||| |||  |||||||||| ||||||||||||| || ||  |||||| ||  |||| |     || | |   || ||     |  |   ||| | ||| ||   |        |||    |||                                                         
ATCCAGATATGCAGAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGgtataacatttaccatttcaactcgtttatt-tagcctatgttctctctggcttttcttggattaatccttcacatgcatggacag---------------------------------------------------

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCTGAAATGCAGAGCCACATAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactattacaacaaatacccctagtttataattctttgttgatcttgttttgctatcaaagtcttatcaggaacatatgtttttttaatttcaccttcttaaagagcttagcctgaatcttttaattttgcag
|| | || ||||||||| | ||||| ||||| |||  |||||||||| ||||||||||||| || ||  |||||| ||  || |       || | ||  || |    || ||||   ||||  ||       ||  |||  || | |  |   |||   ||                                              
ATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGgtatcacattttctgtttcaactcgtatattttgg--ctatgttttccttggatt-------aatccttcacatgcatgtggctttggatag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30130582|gb|CB915921.1|CB915921
EST:     TAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCG                         GCTGGATATCTTGATATATGGGAACCAGCTACTTTGGCCATTAAGAGGGAA
genomic: TAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactat ... aattttgcagGCTGGATATCTTGATATATGGGAACCAGCTACTTTGGCCATTAAGAGGGAA
EST: gi|110360360|gb|EC923401.1|EC923401
EST:     TAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCG                         GCTGGATATCTTGATATATGGGAACCAGCTACTTTGGCCATTAAGAGGGAA
genomic: TAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactat ... aattttgcagGCTGGATATCTTGATATATGGGAACCAGCTACTTTGGCCATTAAGAGGGAA