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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag

Basic information

species Vitis vinifera
transcript Vv07s0005g06680.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 20
-------------------------CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag
                         |||||||||||||||||| ||| |||| ||||| || ||||| || ||||| |||||||| |||||| ||||||| |||||| | ||||| |||||||||| | ||||    | ||    | ||||    |||     || || ||  |||  |   |  || | |   |||||| |    | ||| |                                                    
AACCAAAAGAGTGCAAGGAGCGTCACAAAATTTTAATGGATAGAACTTCTGGGGATGGTGCAGATAGCGCGGAAGACTCAGGGTCTTCTCAGTCTTATCCgtctacactacctggaattccaaaggcatgaat----acttctattatttg----gtt-----taattactcatttggtccct-atagttacaaaaactt-tccctttttgtccc--------------------------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA03G18730.1 (Glycine max), 5'ss of exon 8
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag
    | |||||||||||| ||| | || ||||| || ||||||||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||| |||| | | | |||  |||| | ||||| |    ||||                                                                                                         
----ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCATgtaattttttttttcgtttttcattt-ttag---------------------------------------------------------------------------------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA16G14060.1 (Glycine max), 5'ss of exon 19
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaactt-gtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag
    | |||||||||||| ||| | || ||||| || ||||||||||||||||||||||| || ||  ||||||| |||||||| ||||| ||||| |||| | | | |||| |||||  |||| |   | || ||   |     | ||  |   |  ||| ||||  || | || | ||                                                             
----AATTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACATTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCATgtaatttgtttttcatttttagtatatttggatgca----ttgttgaaacctcgtgt-ttgacatacattttgcag-------------------------------------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G24880.1 (Arabidopsis thaliana), 5'ss of exon 16
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttg-tagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag
 || ||| | |||||||  |||||||||||||||||||||||||| ||||||||||||   |||||| |||||||||| || ||||||||||| ||||||||     ||||     |     | ||| | | |  | | |||  ||| | |  ||      ||| |  |   |  | ||      ||| ||| ||                                              
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATCCCAAAGgt-----tttt----ctatagctctgagatggtgaacaaagtgtcttctatgcttaaactaatttaaatgccccggatatgtctgtgatattcag----------------------------------------------

upper sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 17
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttg-tagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag
 || ||| | |||||||  |||||||||||||||||||||||||| ||||||||||||   |||||| |||||||||| || ||||||||||| ||||||||     ||||     |     | ||| | | |  | | |||  ||| | |  ||      ||| |  |   || | ||      ||| ||| ||                                              
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgt-----tttt----ctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaa-atgccctggatatgtctgtgatattcag----------------------------------------------