Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGGTCGGCTCTCACAAGAGGAAGTCATGGCACAATTGCCTTCCTTTTTGCCTGCTCTTTTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataattaattctttttaatctagattttatatttcccattttagcagtatgaagatgtgatctatcaggtgaaaagcttaaaaaagaccactgtaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA03G32710.1 (Glycine max), 5'ss of exon 20
TGTTGGTCGGCTCTCACAAGAGGAAGTCATGGCACAATTGCCTTCCTTTTTGCCTGCTCTTTTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataattaattctttttaatctaga---ttttatatttcccattttagca-gtatgaagatgtgatctatcaggtgaaaagcttaaaaaagaccactgtaat
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TGTGGGGCGGCTTTCTCAGGAAGAACTAATGGCTCAGTTACCCTCGTTTCTGCCTGCCCTTTTCGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGGAAGgtactta--agatcttttttatctggagtaatttatgttccatagtgtcgtacatcttaagaaatgtctgatggtaaaaaacactgtaaagtggcatatgta--
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA19G35460.1 (Glycine max), 5'ss of exon 20
TGTTGGTCGGCTCTCACAAGAGGAAGTCATGGCACAATTGCCTTCCTTTTTGCCTGCTCTTTTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataattaattctttttaatctag-attttatatttcccattttagca-gtatgaagatgtgatctatcaggtgaaaagcttaaaaaagaccactgtaat
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TGTGGGGCGGCTTTCTCAGGAGGAACTGATGACTCAGTTACCCTCGTTTCTGCCTGCTCTTTTCGAAGCTTTTGGTAACCAGAGTACAGATGTTCGGAAGgtact--ttagattttttatctggagtaatttatgttccatagagttgtacatcttaagaaatgtcagatggtagataatgctgttaagtggcatatgtagt
upper sequence: Vv07s0005g05030.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT2G20190.1 (Arabidopsis thaliana), 5'ss of exon 20
TGTTGGTCGGCTCTCACAAGAGGAAGTCATGGCACAATTGCCTTCCTTTTTGCCTGCTCTTTTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataattaattctttttaatctagattttatatttcccattttagcagta--tgaagatgtgatctatcaggtgaaaagcttaaaaaagaccactgtaat-----------------------
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TGTGGGTAGGCTCTCGCAAGAGGAATTAATGGATCAATTGTCGTCTTTTTTGCCTGCGGTTTTTGAAGCATTTGGGAGCCAAAGCGCGGATGTCCGCAAGgtaa-----aggaattgaaaaaaaaaacttgacttttctactcataccagtaacttacgatttgatgaaattgg--acaagttataactaactctctatgagggggtctttgctgtttgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394263|gb|EC958946.1|EC958946EST: TTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAG ACTGTTGTATTCTGTCTAGTGGACATCTATATCATGCTTGGGAAAGCTTTT
genomic: TTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataatta ... gtgttggcagACTGTTGTATTCTGTCTAGTGGACATCTATATCATGCTTGGGAAAGCTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGGTCGGCTCTCACAAGAGGAAGTCATGGCACAATTGCCTTCCTTTTTGCCTGCTCTTTTTGATGCATTTGGGAATCAGAGTGCAGATGTTCGTAAGgtaataattaattctttttaatctagattttatatttcccattttagcagtatgaagatgtgatctatcaggtgaaaagcttaaaaaagaccactgtaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa