1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttccttctctcatctgtgtagactcaaatgtgtttctttaatttggattacttttggtttaaattcagctgtttcttgtatatattcattttc...
species | Vitis vinifera |
transcript | Vv07s0005g00880.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352773567|gb|FQ472349.1|FQ472349
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352781327|gb|FQ467773.1|FQ467773
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|33402398|gb|CF208025.1|CF208025
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGTACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|110412847|gb|EC978610.1|EC978610
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|110363110|gb|EC926680.1|EC926680
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGTACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352773938|gb|FQ473070.1|FQ473070
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352778134|gb|FQ467187.1|FQ467187
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTGGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352782337|gb|FQ470240.1|FQ470240
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|110407161|gb|EC972758.1|EC972758
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|352776926|gb|FQ474233.1|FQ474233
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|110361036|gb|EC924487.1|EC924487
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGTACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTAEST: gi|110698892|gb|EE076910.1|EE076910
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
EST: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAG GAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
genomic: ATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttc ... tattctgcagGAAGCTGCATTAAACCTTGGAGTGCTGACCAGTGAAGAATTTGATCAACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAGGGAAGGACTCTGAAGgtgatgcttccttctctcatctgtgtagactcaaatgtgtttctttaatttggattacttttggtttaaattcagctgtttcttgtatatattcattttc
- - - - - - - - - - GCTGCT
- - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc