Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAAGTCGTGTCTTTGTATTTACGCCTAGGGGAGAGgtaaccatgtggataacttttaacatatgaaaattaagatgctcagagttttatttatccttctccatgctattcacag

Basic information

species Vitis vinifera
transcript Vv07s0005g00770.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA03G37450.1 (Glycine max), 5'ss of exon 19
AGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAAGTCGTGTCTTTGTATTTACGCCTAGGGGAGAGgtaaccatgtggataacttttaacatatgaaaa---------ttaagatgctcagag--------ttttatttatccttctccatgctattcacag---------------------------------
||| |||||||| || |||||||  || ||||||||||| |||||| | || | ||||||| | || |||||||||||||| || || || |||||||||||||  ||  |  |  | | || |||    |           || || || |   ||        |||     ||   | || || ||||   |                                   
AGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACTATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGgtaaggattggtctgtcatataccatgactattttttcccccttcagttgattgaagaagacaattttagaacatgtatttcaatactatctgccttttcttgatgattttttgtcacattatatgcag

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA19G40050.1 (Glycine max), 5'ss of exon 17
AGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAAGTCGTGTCTTTGTATTTACGCCTAGGGGAGAGgtaaccatgtggataacttttaacatatgaa--------------aattaa--gatgctcagagttttat--ttatccttctccatgctattcacag---------------------------------
||| |||||||| || |||||||  || ||||||||||| |||||  | || | ||||||| | || |||||||||||||| || || || |||||||||||||  ||  |  |  | | || |||    |              ||||||  || |   | | |||||     ||   | |  || ||||   |                                   
AGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACCATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGgtaaggattggtctgtcatataccatgcctatctttccccccttcaattaattgaagaagacaattttagaaacatgtatttgaatactatctgccttttcttgataattttttgtcacattttatgcag