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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcagaataggttattctatcattattttgaattccaaatctattagagattgtgcttggttgctctctggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag

Basic information

species Vitis vinifera
transcript Vv06s0061g01170.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G092741_T01 (Zea mays), 5'ss of exon 3
TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcagaataggttattc-tatcattattttgaattccaaatctattagagattgtgcttggttgctctctggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag
||| ||||| ||  |||| ||||| ||||||| | | || ||||||||  | |||||    ||| | |||||||||||||| ||||||||||||||| ||||   |  || |     |||     | |   | |   |||  |   |||     |||||||    |  |     | ||||   ||||  |  |   |   |                                                            
TGAAATACAACAGAGAGCAGTTGAGTATTTTGAACTAAGCAGGAAAGGCCCTGCTTTGGCAGATGTGTTGGCTGAAATGCCAAAATTCCCTGAGCGTGAGgtaactccattgctaggatacaattttatcttggtcaatttatgctattgagaagaattcctccccctt-----actgtg---ggttatttgccaaatccag-----------------------------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 17
TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcagaataggttattctatcattattttgaattccaaatctattagagattgtgcttggttgctctctggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag
 || ||||||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||||| |  ||         |||||   |||||      | || |   |||    || ||    | | |  ||     | || |      |||  ||||   | | | | | |   ||  |                                          
CGAAATACAGCAAAGAGCTGTTGAATATTTTGCATTGAGTAGAAAAGGTGCAGCTCTAATGGATATATTGGCCGAAATGCCTAAATTCCCTGAACGACAGgttttcttgca------atattgattcagagacaacttttttgaaatt----tgcatggtcactttgataat--ctatggtataacactca-tggattcatactctttttcaaattcag-----------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 17
TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcaga-ataggttattctatcattattttgaattccaaatctattagagattgtgcttggttgctctc-tggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag
 || ||||||||| || ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||||| |  ||         |||||   ||||| | |  |||||  |     | |||| ||    ||||  || || | | |      | || ||| ||||   | | | | | |   ||  |                                          
CGAAATACAGCAAAGATCTGTTGAATATTTTGCATTGAGTAGAAAAGGTGCAGCTCTAATGGATATATTGGCCGAAATGCCTAAATTCCCTGAACGACAGgttttcttgca------atattgattcagagacaacttatttga-----aatttgcat----aatcacttcgataatctatggtatagcactcatggatttatactctttttcaaattcag-----------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 17
TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcagaataggttattctatcattattttgaattccaaatctattagagattgtgcttggttgctctctggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag
 |||||||| ||  | || ||||||||||||| ||||||||  |||||  | || || |||||| |||||||||| ||||| ||||| || ||||| ||||| |||  |     || ||  ||      ||   |||| | |  |   |  ||   | | |||    || ||     |||| | ||  | |   | |     | ||   |||                                                
GGAGATACAACAGAGGGCAGTTGAATATTTTGAATTGAGTAAAAAAGGGCCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCGGAGCGCCAGgtttgtgaaattattttatgattctatgaaa---gttactttgacgggaagtttg-tgctaaacgactttga-----tgctggattttttttccgtgtc---tcttccatag------------------------------------------------

upper sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 17
TGAGATACAGCAACGAGCTGTTGAATATTTTGCATTGAGTAGGAAAGGTGCGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttatgggcttcatatttgctcagaataggttattctatcattattttgaattccaaatctattagagattgtgcttggttgctctctggaggaaaattttatgtagtatgtaaattgttgacactaactgttatatcctcttttctaaatgtag
 |||||||| ||  | || ||||||||||||| ||||||||  |||||  | || || |||||| |||||||||| ||||| ||||| || ||||| ||||| |||  |     || ||  ||      ||   |||| | |  |   |  ||   | | |||    || ||     |||| | ||  | |   | |     | ||   |||                                                
GGAGATACAACAGAGGGCAGTTGAATATTTTGAATTGAGTAAAAAAGGGCCTGCCTTTATGGATGTATTGGCTGAGATGCCAAAATTTCCGGAGCGCCAGgtttgtaaaattattttatgattctatgaaa---gttactttgacgggaagtttg-tgctaaacgactttga-----tgctggattttttttccgtgtc---tcttccatag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543150|gb|CF511382.1|CF511382
EST:     CGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAG                         TCCTCATTGCTTAAAAAAGCCGAAGATGCTGAAGTTGACACTGCAGAGCAA
genomic: CGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttat ... ctaaatgtagTCCTCATTGCTTAAAAAAGCCGAAGATGCTGAAGTTGACACTGCAGAGCAA
EST: gi|110379780|gb|EC944999.1|EC944999
EST:     CGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAG                         TCCTCATTGCTTAAAAAAGCCGAAGATGCTGAAGTTGACACTGCAGAGCAA
genomic: CGGCTTTAATGGATATATTGGCTGAAATGCCTAAATTCCCTGAGCGTCAGgtgtgtttat ... ctaaatgtagTCCTCATTGCTTAAAAAAGCCGAAGATGCTGAAGTTGACACTGCAGAGCAA