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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAGGAGAACTTTATGCAAAGAAACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttcattaatatgcatagcttatcttctgttgtgcagatttattgtgttgcattttgatatttttttcctgattaaattgatatttattccttga...

Basic information

species Vitis vinifera
transcript Vv06s0004g06920.t01
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322291|gb|CD005553.1|CD005553
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGANAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|352764397|gb|FQ472754.1|FQ472754
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|71882349|gb|DT031404.1|DT031404
EST:     AAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|352769630|gb|FQ468558.1|FQ468558
EST:     CCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: CCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|71888454|gb|DT037509.1|DT037509
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|352768928|gb|FQ468119.1|FQ468119
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGTTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|71889378|gb|DT038433.1|DT038433
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|71890359|gb|DT039414.1|DT039414
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACTTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|30321972|gb|CD005234.1|CD005234
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|27580319|gb|CB003014.1|CB003014
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|27581545|gb|CB004240.1|CB004240
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|32250239|gb|CD716058.1|CD716058
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|110360631|gb|EC923892.1|EC923892
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|30321898|gb|CD005160.1|CD005160
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTG
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTG
EST: gi|352781433|gb|FQ468277.1|FQ468277
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|71888451|gb|DT037506.1|DT037506
EST:     CGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: CGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|27582400|gb|CB005095.1|CB005095
EST:     GACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: GACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
EST: gi|30321402|gb|CD004664.1|CD004664
EST:     AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCT                         ATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT
genomic: AACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttca ... tgtggtttagATATGGACTAGCACACTGCAGAGAACAATTTTAACGGCAAGTCCAATTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGCAGGAGAACTTTATGCAAAGAAACTTTCTACCTTCGTGGAAAAGAGACTGAAACCTGAAAGGGCTGCTTCTgtaagtttcattaatatgcatagcttatcttctgttgtgcagatttattgtgttgcattttgatatttttttcctgattaaattgatatttattccttga

- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga