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21 5' 3' | 22 5' 3' | 23 5' 3' |
ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctcatgtctgtcatgtatatgattttctctcactgataaaatacataaaaataaatgagatttctattttggatatatccaagttcatagttgc...
species | Vitis vinifera |
transcript | Vv06s0004g03700.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAG GTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGEST: gi|32267450|gb|CD716413.1|CD716413
genomic: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctca ... tcccttgcagGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
EST: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAG GTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGEST: gi|351036173|gb|FQ464018.1|FQ464018
genomic: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctca ... tcccttgcagGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
EST: ATTCTATGCTGCACAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAG GTGTGATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGEST: gi|30251622|gb|CB969355.1|CB969355
genomic: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctca ... tcccttgcagGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
EST: TAGTTGTTGCATTGGAGTACCTTCACTGTCAAG GTGTGATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGEST: gi|30325043|gb|CD008305.1|CD008305
genomic: TAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctca ... tcccttgcagGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
EST: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAG GTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
genomic: ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctca ... tcccttgcagGTGTAATCTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTATGCTGCAGAGGTAGTTGTTGCATTGGAGTACCTTCACTGTCAAGgtagatctcatgtctgtcatgtatatgattttctctcactgataaaatacataaaaataaatgagatttctattttggatatatccaagttcatagttgc
- - ATGCTG
- - - TGCTGC
- - - - CTGCAG
- - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa