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GTACGTCCCAGATGAAAAGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcctgactcatttggaaaagtagttggaaccacatgctaaagatgtctcatgcccaacatacatgcatacatgcaaacatgctgagtaatagta...
species | Vitis vinifera |
transcript | Vv05s0102g01110.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|18459158|gb|BM437436.1|BM437436
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30251648|gb|CB969381.1|CB969381
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30251671|gb|CB969404.1|CB969404
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTCCCCTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|110364442|gb|EC924185.1|EC924185
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30320658|gb|CD003920.1|CD003920
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30321185|gb|CD004447.1|CD004447
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30251591|gb|CB969324.1|CB969324
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAAEST: gi|30251604|gb|CB969337.1|CB969337
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
EST: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAG GCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
genomic: AGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcct ... aatttttcagGCATGCGATATCAAGGACCCAAAGCAAAATATTGAGTGGACGGTGCCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGTCCCAGATGAAAAGGGTGAGCTGAGGCTGCAGATAAATGCTCAAAATTGCCTACACTGCAAGgtaatatcctgactcatttggaaaagtagttggaaccacatgctaaagatgtctcatgcccaacatacatgcatacatgcaaacatgctgagtaatagta
- - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaca