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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcatatcattcattttctagtgacaattgcatgctttatttaaattttttaaattgtaattgaagtttctattgtaaattttgaaatatctttg...

Basic information

species Vitis vinifera
transcript Vv05s0077g01200.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 17
GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcatatcattcattttctag----tgacaattgcatgctttattta-aattttttaaattgtaattgaagtttctattgtaaattttgaaatatctttg---
|||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||| |||| | || |||| ||||||||| ||| ||||||| | ||  | ||    ||||||| |    || |||||   | | || |||  || || ||   || | |      ||  | |||       |||||||| ||||   
GTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatg--tttctgctattttctggaacatgtcaatttt-taccttgtttgtaacttgtttttttatgaccattattcttcttga-----ctgaaatatatttgtgt

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA07G37040.1 (Glycine max), 5'ss of exon 15
GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcatatcattcattttctagtgacaattgcatgctttatttaaattttttaaattgtaattgaagtttctattgtaaattttga----aatatctttg---
|||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||| |||| | || |||| ||||||||| ||| ||||||| | |   | |  |   |||||| |   | ||  ||   ||||  |    ||| ||| ||||  ||| | |  | ||| |   | ||||    ||||| |||    
GTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAGgttcatctttgtgct--gttttctggaacctat--caatttttaccttg--tttgtaacttgtttttgta-tgaccattattcttcttgactgaaatatatttatat

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA15G15270.1 (Glycine max), 5'ss of exon 16
GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGg--tgcctgcatatcattcattttctagtgacaattgcatgctttatttaaattttttaaattgt-aattgaagtttctattgtaaattttgaaatatctttg
|||| ||| ||||||||||| |||||||| |||||| |||||||||||||||| ||||| ||| || || |||| |||| | ||||||| ||| ||||||  |   | ||| || |    | |||| |             | ||       |      ||||  | ||| | |   | ||  | |||||  ||| | |   
GTTAGAGGCATGATAACAGACTTTGGAGATGACATGCATTGCCAGTTTCTTGAGATTCTTCGCTGTCTATTAGACTCATGCTCATTGTCTGGAGCACAGgtttattttcatttcctgatctctctattttttgccttgctttctaggagtgatcacaggattgggagttggattgattttttaagattttacaattttt---

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA09G04260.1 (Glycine max), 5'ss of exon 17
GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcatatcattcattttctagtgacaattgcatgctttatttaaat--tttttaaattgtaattgaagtttctattgtaaattttgaaatatctttg-
|||| ||| |||| |||||| |||||||| |||||| |||||||||||||||| ||||| ||| || || |||| |||| | ||||||| ||| |||||||   |   |||    |  | |||| |      |   |||||| |   | |  |      || | | ||| | |   | ||  | |||||  ||| |||||  
GTTAGAGGCATGACAACAGACTTTGGAGATGACATGCATTGCCAGTTTCTTGAGATTCTTCGCTGTCTATTAGACTCATGCTCATTGTCTGGAGCACAGgtttatttttatttcccgatctctatttttgcct---tgctttctaggagtgatcacagtatgggagttggattgattttttaagattttacaatttcttttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32270535|gb|CD719694.1|CD719694
EST:     TTGAAATTCTACGCAGTTAACTTGATTCATACACATTGTCAGGATCACAG                         AGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGGGTCAATTAATT
genomic: TTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcat ... ttttgtgcagAGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGGGTCAATTAATT
EST: gi|32270540|gb|CD719699.1|CD719699
EST:     TGAAATTCTACGCAGNTTACTTTGAT-CATACACATTGTCAGGATCACAG                         AGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGG
genomic: TGAAATTCTACGCAGTTTACTA-GATTCATACACATTGTCAGGATCACAGgtgcctgcat ... ttttgtgcagAGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGG
EST: gi|37184362|gb|CF603716.1|CF603716
EST:     TTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG                         AGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGGGTCAATT----
genomic: TTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAGgtgcctgcat ... ttttgtgcagAGAGATACTATTATTGAGATATTCTATGAGAAGCATTTGGGTCAATTAATT