Sequence
atgc intronic sequence ATGC exonic sequenceGCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 20
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
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GGACTGTCGTTGATTCCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttttttccctcccttctctaccaggatttattattataatcacagatgagaattggtttatgggaaagaaattttccatagttcata
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 20
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca--
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GGACTGTTGTTGATACCAAAATCTGCCATCCAACAGAATTTGATTTTTATCTCTGCAGCCATGCTGGCATCCAGgtagaagatagttttctttcctcccttctatatcaggatttattgttataattac--aaatgagaattggttatgggaaagaaaattgtcatagttcaaaac
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 19
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaac---tgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
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GGACTGTTGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTGTGCAGTCATGCTGGCATCCAGgtagaagacagtttttctctctcttcaataccgagcttatgattatgatgattgattatgaaacgaaatattttagcaaagttaatacctgtcagataat---
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 11
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttcta-aagtgatgaaaagcaacatattgccca---
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GGACTGTAGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGTAGTCATGCTGGCATCCAGgtagaagatagttttattttttctctctt-ctatactgatc---tttatgagtaacgatgattggtcatgaaacaagacattttagcaaagatggtacctgtca
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ19862 (Selaginella moellendorffii), 5'ss of exon 18
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaacatgatggcaccctggcctttgtagctttg-ctcatacgacgagactatgttacag----------------------------------------
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ14096 (Selaginella moellendorffii), 5'ss of exon 18
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaagttgatggagccctggcctttgtagctttg-ctcatacgacgagattatgttacag----------------------------------------
upper sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: EFJ14095 (Selaginella moellendorffii), 5'ss of exon 18
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
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GCACTGTGGTGGATTCGAAGATTTGCCATCCAACGGAGTTTGACTTCTACCTTTGCAGCCATGCCGGCATTCAGgtaacttgatggagccctggcctttgtagctttg-ctcatacgacgagactatgttacag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188618|gb|CF607967.1|CF607967EST: GTCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAG GGGACAAGTAGGCCTGCTCATTACCATGTTTTATGGGATGAGAACAATTTC
genomic: GCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctct ... tttgtggcagGGGACAAGTAGGCCTGCTCATTACCATGTTTTATGGGATGAGAACAATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGgtaaagctctgtttttctttcattggaatattaaactgactagatttaaaaataatgaagtgtgtttcttctaaagtgatgaaaagcaacatattgccca
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa