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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttcttttgaatagctataacaattgttcatttcaacattttcactatgtttttgtatacccag

Basic information

species Vitis vinifera
transcript Vv02s0012g00460.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 5'ss of exon 17
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgt----ttattagcagcctcttt----tatttctgttcttttgaatagctataacaattgttcatttcaacattttcactatgtttttgtatacccag--
|||||| || ||||||||| | ||||| ||||||||||||||||||||||| || ||  | ||  ||||||| ||||| ||  | || ||||||||||||||     ||  |  | | |  |     | ||  ||   ||     |      |||      | || ||| ||  |     |  |   | | | ||     
GAAGAGGTTTCCCATGTGCTTAATTTTTGGTGGTGATGGAAGCTATATGTCTCCATACTACCTACACAGTGATACATTGTTATCTAACCTTCTTGGCCAGgtaaaaataagattaacttaatagggatgttaatgacattcctggtgttccaaacttccaattatatcatcacataggacagttcactttgttccacatt

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GRMZM2G015291_T01 (Zea mays), 5'ss of exon 9
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttt----tatttctgttc---ttttgaatagctataacaattgttcatttcaacatt--ttcactatgtttttgtatacccag--
|||||| || ||||||||  | ||||| |||||||||||||||||||||||||| ||  ||||  | ||||| |||||  |  |||||||||||||||||||  |||   |   |  |     || | |  ||    ||| | |  |||  | |    |   ||||     ||  |  |  | ||  ||   | | |    
GAAGAGGTTTCCCATGTGTCTAATTTTTGGTGGTGATGGAAGCTATATGTCCCCATACTATCTACATAGTGATACATTGCTATCAAATCTTCTTGGCCAGgtaaattcagattttgctgatgataataccatttatgtttgggactgctccagctccagaaaattt-ggtgttggtggagcaggtcattaggtgctccaaa

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA01G41140.1 (Glycine max), 5'ss of exon 17
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttct--tttgaatagctataacaattgttcatt-tcaacattttcactatgtttttg-tatacccag
||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||||||| ||| ||| ||| | ||||| || || ||||| ||||| | ||      |  | ||| |  ||||    |||   ||| |||      | | |||     ||||  | |        ||| ||| | |||
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgtt--tcattgttaatgttgttaagatttagttagttatgttctctatacatagctgacatactaatcccaaacttgatatccacag

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA11G04290.1 (Glycine max), 5'ss of exon 17
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttcttttgaatagctataacaattgttcatt-tcaacattttcactatgtttttg-tatacccag
||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||||||| ||| ||| ||| | ||||| || || ||||| ||||| | ||       | ||    || ||    |||    |  |||      | | |||     ||||  | |        ||| ||| | |||
GAAGAGATTTCCCATGTGCATAATTTTTGGTGGGGATGGGAGCTACATGGCACCTTATAATCTTCACAATGATACACTGTTGACCAACCTCCTTGGTCAGgtatcttgattcattgttaatgttgtgaagatttagtcaattatgttctctatacatagctgacatactaatcccaaacttgatatccacag

upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 5'ss of exon 18
GAAGAGATTCCCCATGTGCATCATTTTCGGTGGTGATGGAAGCTATATGTCCCCTTATAATCTTTACAGTGACACATTATTGACAAATCTTCTTGGCCAGgtttattagcagcctcttttatttctgttcttttgaatagctataacaattgttcatttcaacattttcactatg-tttttgtatacccag-----
||| |||||||| ||||||||  |||| || || |||||||| |||||||| || |||| |||  | ||||| ||| | || ||||||||||||||||||||        |||    ||| | |  ||  |||| |     ||  | |||  | || |   | || | |   | | | |    ||  | |      
GAAAAGATTCCCAATGTGCATACTTTTTGGAGGAGATGGAAGTTATATGTCACCCTATAGTCTCCATAGTGATACACTGTTAACAAATCTTCTTGGCCAGgta-------agctctctttgtctgcgtggttttta-----taccaaaatc-tccactctgaaatctcctaaacgctctccaaatgactattccag