Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaataataatacataagctttttttccctttcatcaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 6
GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaata-ataatacataagctttttttccctttcatcaacag
|| |||||| |||| |||||||| |||||||| ||||||||||||||||||||| || ||||| ||||||| | || | | | | ||| | ||| | | | | ||| ||||| || || | || | || || || | |
GTTATGATGCGACCTATGTTTGGTGCATTTGGAGGGGCTGGAAGTGCCAACTCTATAGCATTTGTGAGCAAGgt-tagttgactttttttttgtctgt---tctactggaaaatagatgcacaggaagtaaagtactaacaagaaaagaagtataagatgcaaaaatacagtgttg-------------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AC196072.3_FGT001 (Zea mays), 5'ss of exon 2
GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaataataatacataagctttttttccctttcatcaacag
|| ||||| |||| |||||||| |||||||| |||||||||||| |||| || ||||| ||||| ||||||| | | | | ||| ||| || | || |||| | || | | | | || || | | || || ||| | | ||| |||
GTTGTGATGCGACCTATGTTTGGTGCATTTGGAAAGGCTGGAAGTTCCAATTCAATTGCATTTGTGAGCAAGgta-----gtgtttggttctgcctcaatcaagaaaaatgactttctcgacttttcaaactgataaaatataagtacaaaaaattac-taagggctagtttggaaac----------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 18
GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaataataatacataagctttttttccctttcatcaacag
||||| ||||| || ||||| |||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||| | | || ||||| || | | | | || | | | | ||| ||| ||| | || || | ||| || | | | | |||
GTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACACTCCATTGCTTTTGTGAGCAAGgcatgg-ctccaatccatctctttcacagacacgcacttgaatagcccttgtgcagaaattatt--aca----tggtc-caagattac-tatggtcctgtctaacctca-------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 17
GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaataataatacataagctttttttccctttcatcaacag
||||| ||||| ||||||||||||||||| ||||| ||||||| |||||| |||| |||||||||||||||| | |||| | | || |||| | ||| | ||| || | | ||| | ||||| |||| ||| ||| | || | || | | | | ||
GTGATATCAAGACCTATGTTTGGAGCATTTGGAAAGGCCGGAAGTGAAAACTCTGTTGCATTTGTCAGCAAGgcatata-atcttt-----tgtcactctgtatcttccattctttccccaattcatttgtggattcagt--taatattaactatagtttatg----tattcttacataaaccag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688779|gb|EC925600.1|EC925600EST: GAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAG GTTGCTGCAGAATGTGGAATAAAAACCCATTATGGACTCACAAAGAGGGTG
genomic: GAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacat ... tcatcaacagGTTGCTGCAGAATGTGGAATAAAAACCCATTATGGACTCACAAAGAGGGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAACTCTATTGCTTTTGTCAGCAAGgcatgaacatctctctctctctctctctctctctctctctctctctctatttctaataataattcaacaacaatagtaataataatacataagctttttttccctttcatcaacag
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG