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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgactttcactctttgttcattcacattatcacgaatttgtgggaaattctacatttcttttagaatgttcctggttgcatggaatcggggttttta...

Basic information

species Vitis vinifera
transcript Vv01s0010g00950.t01
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701014|gb|EE078175.1|EE078175
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|110393306|gb|EC958451.1|EC958451
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|110362948|gb|EC926511.1|EC926511
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|33409238|gb|CF214865.1|CF214865
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|46919271|gb|CN548600.1|CN548600
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|33409643|gb|CF215270.1|CF215270
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
EST: gi|110417557|gb|EC983623.1|EC983623
EST:     TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAG                         TGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG
genomic: TCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgacttt ... cttaacttagTGGGACTCTATTTGCACTTCGCAACATCAGTTGTACATGAAATCACATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTCCTTTGGTTGATGAGAGTTTGGTACTTCTTGGTTATTGTGTCTTTACAGgtatgactttcactctttgttcattcacattatcacgaatttgtgggaaattctacatttcttttagaatgttcctggttgcatggaatcggggttttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaat