Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTGGAAGGACTGCAAAGCTCATTGATCATCTCAAAGATTCCTTCTGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatcttaaaattcagttttttcaattgggtcttgtccaagtgcacagaaatgcttaattggtgctcggccatgtggtattcatgcatggacacatctccgaagcacatgtacctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacag

Basic information

species Vitis vinifera
transcript Vv00s0229g00110.t01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0229g00110.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 15
CTATTGGAAGGACTGCAAAGCTCATTGATCATCTCAAAGATTCCTTCTGTTTCACATGACAAAGGACACAAAAGCCAGAACCG---GAGTGCTTCTAGAGgtaagatcttaaaattcagttttttcaattgggtcttgtccaagtgcacag---aaatgcttaattggtgctcggccatgtggtattcatgcatggacacatctccgaagcacatgtacctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacag
||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |         ||| ||  || | |       | || ||| |  ||  || |  |  || |||  |||    ||||| |     |     |||    || || || | ||    | |                                                                                                    
CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTTTCACATAATCGTAATACCAAGAgtgagtatcatccatattctcctaaaattattatttcgag-ttaagtgcttttttatgggtttgagttattattacatttcaactgtttgactgtgagttg----------------------------------------------------------------------------------------------------

upper sequence: Vv00s0229g00110.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA05G04730.1 (Glycine max), 5'ss of exon 12
CTATTGGAAGGACTGCAAAGCTCATTGATCATCTCAAAGATTCCTTCTGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGg-taagatcttaaaattcagttttttcaattgggtcttgtccaagtgcacagaaatgc-ttaattggtgctcggccatgtggtattcatgcatggacacatctccgaagcacatgtacctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacag
||||| |||||| |||| ||||| || || ||||||||||||||||||| ||||||||| || || ||||||| |||||| ||||   ||||||| || | |||   |     |   |  ||   | ||  ||   | |   || |   |  |   | |||   |  |    ||| |    ||  ||  || | |||                                                                         
CTATTAGAAGGATTGCAGAGCTCTTTAATTATCTCAAAGATTCCTTCTGCTTCACATGAAAAGGGTCACAAAAACCAGAATCGGAAAACTTCTAGGGGgtgagaatctgtgtatacataattctgagtgaatcgcctgcttttgtagtaacctatgtgaatctatattta--catttcaactttttgactgca-acag------------------------------------------------------------------------

upper sequence: Vv00s0229g00110.t01 (Vitis vinifera), 5'ss of exon 17
lower sequence: GLYMA01G41730.2 (Glycine max), 5'ss of exon 11
CTATTGGAAGGACTGCAAAGCTCATTGATCATCTCAAAGATTCCTTCTGTTTCACATGACAAAGGACACAAAAGCCAGAACCG---GAGTGCTTCTAGAGgtaagatcttaaaattcagttttttcaattgggtcttgtc-caagtgcacag-aaatgcttaattggtgctcggccatgtggtattcatgcatggacacatctccgaagcacatgtacctacttggttgtaacagggaatgaccctgaaattgactactgctttgtttaacag
||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |          || ||  || | |       | || |||||  |   || |  |    |    | ||  || |||||  ||    | | ||    || || || | || ||    || |                                                                                                
CTATTAGAAGGATTGCAGAGCTCTTTGATCATCTCAAAGATTCCTTCGGTTTCACATAATCGTAATACTAAGAgtgagtatcatccatatcctcctagaatttttatttcgagtcacgtgctcttttat-gggtcgagttattattacatttcaactgtttgactg-tgagttgcaacag---------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265063|gb|CA816126.1|CA816126
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30127273|gb|CB912612.1|CB912612
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110363810|gb|EC927429.1|EC927429
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110390444|gb|EC955353.1|EC955353
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351024602|gb|FQ433017.1|FQ433017
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGTTTGAGGGGAGCTTCACA
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACA
EST: gi|28966765|gb|CB345798.1|CB345798
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGGGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30320679|gb|CD003941.1|CD003941
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|27755268|gb|CB036023.1|CB036023
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110418677|gb|EC984841.1|EC984841
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110367991|gb|EC931951.1|EC931951
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|110382078|gb|EC938426.1|EC938426
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351048342|gb|FQ449434.1|FQ449434
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|22015302|gb|BQ800336.1|BQ800336
EST:     GAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCCTGAA
genomic: GAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAAT-CTGAA
EST: gi|29785455|gb|CB342449.2|CB342449
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|26267157|gb|CA818220.1|CA818220
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|30252859|gb|CB970410.1|CB970410
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG
EST: gi|351034909|gb|FQ458266.1|FQ458266
EST:     TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAG                         GAA-TAACCATGGTTGAGGGGAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAG
EST: gi|110364261|gb|EC923717.1|EC923717
EST:     TGTTTCACATGACAAAGGACACAAAACCCAGAACCGGAGTGCTTCTAGAG                         GAAATAACCATGGTTGAGGGGAGCTTCCCAGTGAGGGAATCCAATCTGAAG
genomic: TGTTTCACATGACAAAGGACACAAAAGCCAGAACCGGAGTGCTTCTAGAGgtaagatctt ... tgtttaacagGAAATAACCATGGTTGAGGGGAGCTTCACAGTGAGGGAATCCAATCTGAAG