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GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttcttacctttttttttttttttcctgtagttcctttcttcttggaagtgatgggtggatttggcttggatttatttctgtaattggttgtca...
species | Vitis vinifera |
transcript | Vv00s0211g00060.t01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|26263230|gb|CA814293.1|CA814293
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|34319398|gb|CF372152.1|CF372152
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|34543594|gb|CF511826.1|CF511826
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|33408872|gb|CF214499.1|CF214499
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGTAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|71887581|gb|DT036636.1|DT036636
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|77587212|gb|DV222739.1|DV222739
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|110386136|gb|EC950712.1|EC950712
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGAEST: gi|33408956|gb|CF214583.1|CF214583
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
EST: GTGGATACGCAGCTGGATACTATAGTTACAAG TGGGCAGAGGTCTTATCTGTAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
genomic: GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttc ... gattttgcagTGGGCAGAGGTCTTATCTGCAGATGCTTTCTCTGCCTTTGAGGATGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATACGCAGCTGGATACTATAGTTACAAGgtaatatttcttacctttttttttttttttcctgtagttcctttcttcttggaagtgatgggtggatttggcttggatttatttctgtaattggttgtca
- - - - GCAGCT
- - - - CAGCTG
- - - - - GCTGGA