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GCTATGGTAGTTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcatttaataactccttaacatcaaattctgccagtgaatttgcttgctcttgtcaatcctgctgaatgggtggccaaataccatgaattttat...
species | Vitis vinifera |
transcript | Vv18s0001g12560.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|110384138|gb|EC948555.1|EC948555
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|28968713|gb|CB347746.1|CB347746
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGCCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|33404093|gb|CF209720.1|CF209720
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|110382391|gb|EC939356.1|EC939356
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|30295718|gb|CB972512.1|CB972512
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|33404176|gb|CF209803.1|CF209803
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|351014223|gb|FQ434812.1|FQ434812
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|33402192|gb|CF207819.1|CF207819
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCCEST: gi|33402179|gb|CF207806.1|CF207806
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
EST: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAG ATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
genomic: TTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcat ... gatgttgcagATTCTTCCAATCAATATAAAGGGCCTTGCAGGGAGTGTTGCAACCCTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATGGTAGTTGGCTTCTCTCTGGGAATGGGACCCATTCCTTGGGTTATAATGTCTGAGgtaccttcatttaataactccttaacatcaaattctgccagtgaatttgcttgctcttgtcaatcctgctgaatgggtggccaaataccatgaattttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatacca