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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGgtattataatcgctcaccttttcattaagttgatcacacattttactttttgaacttacagtattttccttatgcgctaatgaactcattgactggaaca...

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA05G07920.1 (Glycine max), 5'ss of exon 16
GCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGgtattataatcgctcaccttttcattaagtt--gatcacacattttactttttgaacttacagtattttccttatgcgctaatgaactcattgactggaaca-
|| || |||||||| || ||||| || |||||||||||||| ||| ||||||| ||||||||  ||| |||    |  | | |  |||   |    | ||   |       |  ||     |||    |||       |||| |  |  ||  | | || 
GCTTTCTGGAGAGTACGGATTGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcgaat-gctaggatacttactgcgttataactttatatgaaataccggtagattgtgaaattcatattacagagccatgagccaa--gagggaatcaa

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA17G13080.1 (Glycine max), 5'ss of exon 16
GCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGgtattataatc--gctcacct-tttcatta--agttgatcacacattt-tactttttgaacttacagtattttccttatgcgctaatgaactcattgactggaaca
|| ||||||||||| || || || || |||||||||||||| ||| ||||||| ||||||||  || |  | | || | || |||||  | || || | | |    ||  || |||| ||    ||||      ||| |   | |     ||  ||| |    
GCTTTTTGGAGAGTACGGATCGAAGCGGCATTTGCATTGGCAAATTCAGCATCTGAGgtattcaaagctaggttacttattgcattataactttatgaaataccggtagattgtgaaattc--atattacagccatgagtcga-gtgggaatcaactagg---

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 5'ss of exon 16
GCCTTTTGGAGAGTCCGAATTGAGGCAGCATTTGCATTGGCTAATACAGCATCCGAGgtattata---atcgctcaccttttcatt--aagttgatcacacattttactttttgaacttacagtattttccttatgcgc-taatgaactcattgactggaaca
| ||| |||||| | || |||| |||||| |||||||||||||| |||||||| ||||||| |||   || | |||   ||   ||  ||   ||  | || | | | |  |  || ||  |  | ||   ||| | || || |       ||  |   |   
GTCTTCTGGAGAATACGTATTGCGGCAGCGTTTGCATTGGCTAAAACAGCATCAGAGgtatgataaaaattgttcaatcttatgttccaaagggacaagacgtataa-taatcaaatttgta--acttgatttaagtgcatagtatgaaggttagcaaaa---