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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatggcggattccagatgattacttactattttttattatctacaatatatgattgtaccttttcaactattgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 16
TAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatggcgga----ttccagatgattacttactatttt--ttattatctacaatatatgattgtaccttttcaactattgcag-------------
||| ||||| ||| ||||||||||||| ||||| |  || ||| |||  ||     |||| ||||||||||| ||||||||||| ||||||||||||||||| | |||| |       ||        | |  || || | |  || | |     | ||    | ||||  || |    |   |                
TAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCACAGgtttgtatgtcaacactttttttccctctcatataataatataattgtcaaaccaattaccaaaatgtaagttgttggttgaaggtatatggatggtttt

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA05G03270.1 (Glycine max), 5'ss of exon 12
TAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatggcggattccagatgattacttactattttttattatctacaatatatgattgtaccttttcaactattgcag
||| |||||  || ||||||||||||||||||| || || ||   ||  |    | | || ||||||||||| |||||| | || ||||||||||||||||| ||||  | ||| |       || | ||    | |  |    | |||| ||| | ||  ||  ||| |   ||| |   
TAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGTCCCGAAACAAAATAGAACTTTGACCAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGgtatatacaggggaatatttgccatgaattttgctctcct----tatacagtat-tcataatatatttcctggtatag---

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 14
TAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatggcggatt-ccagatgattacttactattttttat----tatctacaatatatg--attgtaccttttcaa-ctatt-gcag-----------------
||| |||||  || ||||||||||||||||||| |  || ||   ||  |    | | || ||||||||||| |||||| | || ||||||||||||||||| ||||  | ||| |    |  |   | || |   |  ||||    | |  | |||||||    |||||     | |  |||||   |                  
TAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGCCCCAAAACAAAATAGAACTTTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGgtatatacaggggaatatttgtcgtggattttcctctccttatactgtgttcataatatatttccttgtataggatgaggctattcataatatatttcctggtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255057|gb|CB971504.1|CB971504
EST:     AGTTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAG                         GATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAA
genomic: AGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatgg ... actattgcagGATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAA
EST: gi|110711745|gb|EE088578.1|EE088578
EST:     AGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAG                         GATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAA
genomic: AGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCACAGgtgtatatgg ... actattgcagGATGAGGCACTTCTTGCATGTTGGAAGCATCAATTGGACCGGGATTCTGAA