Sequence
atgc intronic sequence ATGC exonic sequenceTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaatgcttctaaggtttgcataatgattcctatctctttgcagacccttccttttgttttcccccccaggtataga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA14G32500.1 (Glycine max), 5'ss of exon 16
TACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaat-gcttctaaggtttgcataatgattcctatctctttgcag-acccttccttttgttttcccccccaggtataga
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CACTAGGAATTCAACTGCTGGGGTAGGACTTATCAGTCCACCTCCCCATCATGATATTTATTCAATCGAAGACCTTGCCCAGCTAATTCATGATCTTAAGgtattttcatctgtgtattctattcttttacaatcaatgcttcta-attgaatattactcaaatatgttattcctgtttaatacattttgttaatttgtag-
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 16
TACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaat-gcttctaaggtttgcataatgattcctatctctttgcagaccct-tccttttgttttcccccccaggtataga-
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CACAAGGAATTCAACCCCCGGTGTAGGACTTATCAGCCCACCTCCTCATCATGATATTTACTCTATTGAAGACCTTGCCCAACTAATTCATGATCTAAAGgtatgatcatatcttgcttcaatccttttacattggatacttttggttggattttgttgtcttaggtgttcatcttctttaatccctttttgttactatgcag
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA19G16450.1 (Glycine max), 5'ss of exon 12
TACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaat-gcttctaaggtttgcataatgattcctatctctttgcagacccttccttttgttttcccccccaggtataga-------------------
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CACTAGGAATTCAACTTCCGGTGTAGGACTTATCAGTCCACCTCCCCATCATGATATTTATTCAATTGAAGATCTTGCCCAACTAATTCATGATCTGAAGgtattttcatttgtgtattctactcttttgcaatcaatgtttcta-attgaatattactcaattat-gttattcccatttaata--ctgttgagatactgaaggttttgttaatttgtag
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 16
TACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaatgcttctaaggtttgcataatgattcctatctctttgcagacccttccttttgttttcccccccaggtataga---
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CACAAGGAATTCAACCCCTGGTGTAGGACTTATCAGCCCACCTCCTCATCATGATATTTACTCCATTGAAGATCTTGCCCAACTAATTCATGATCTAAAGgtatgttcatatcttgcttcaatccttttacattggatactttttgttggattttgttgccttaggtgttcatcctctttaatccctttttgtttatatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690765|gb|EC957455.1|EC957455EST: ATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAG AATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTAGTATCTGAAGCTGGT
genomic: ATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagat ... ttttttgtagAATGCTAATCCATCCGCCCGAGTTAGTGTGAAGCTGGTATCTGAAGCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCCCACCTCCGCATCATGATATCTATTCAATTGAAGACCTTGCCCAATTAATTCACGATCTTAAGgtatgcagatatgcttcttcaagtaaatgcttctaaggtttgcataatgattcctatctctttgcagacccttccttttgttttcccccccaggtataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc