1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGGTGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccatcggatctctataatttatagttcttctaactagtaagctaagagagaaaattaggggccagtttgggaacgttcttaaaacccgttctca...
species | Vitis vinifera |
transcript | Vv16s0050g02630.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|27580764|gb|CB003459.1|CB003459
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|110363183|gb|EC926755.1|EC926755
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|27579344|gb|CB002039.1|CB002039
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|110420745|gb|EC987025.1|EC987025
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|34549961|gb|CF518193.1|CF518193
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|110363099|gb|EC926669.1|EC926669
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCTTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCEST: gi|34550831|gb|CF519047.1|CF519047
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
EST: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAG CACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
genomic: TGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccat ... atattttcagCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGgtttgtccatcggatctctataatttatagttcttctaactagtaagctaagagagaaaattaggggccagtttgggaacgttcttaaaacccgttctca
- - TGAAGC
- - - - CTCCTC
- - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa