Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgttgtcatactatgattttacttatgataatatgcctttaatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g67740.1 (Oryza sativa), 5'ss of exon 16
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgtt--gtcatactatgatttta-cttatgataa---tatgcctttaatag---
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TCTTGAGAAGAGGGTCAATAAGAAAGTTATGGCAATGTTTGAGAAGGCAGAGGATGAGTATAATGATTTGATGTCAAAGAAAAACATCATTGAGgtgggtcttaccttttctagtgataacctaggacttactttaaaagcagcatacgtaaaccttttgttttcatctgcag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G006452_T02 (Zea mays), 5'ss of exon 10
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgttgtcatacta----tgattttact-tatgataatatgcctttaatag-------
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TCTTGAGAAGAGGGTCAATAAGAAAGTAATGGCAATGTTTGAGAAGGCGGAGGATGAGTACAATGATTTGATGTCAAAGAAAAACATCATCGAGgtatct--cctatcatgtacagttttcttgataaactgaaagtagttttaatatctgggcacataccttgtctcatctgcag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 17
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgttgtcatactatgattttacttatgataa---tatgcctttaatag----------
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GCTTGAGAAAAGGGTGAACAAGAAAGTGATGGCAATGTTTGAGAAGGCTGAAGATGAGTACAATGATTTGATGTCCAAAAAAAACATAATTGAGgt----aatttccaatctatttccacatttttctaactttcttccataaatgcttaatctatttatctatttatttttcctag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G27210.1 (Glycine max), 5'ss of exon 17
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgttgtcatactatgattt-----tacttatgataatatgcctttaatag
|| || |||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||| ||| |||||||||||| | ||||||| || || || || ||| | | | | |||| || | ||| |||
GCTTGAAAAAAGGGTAAACAAGAAAGTGATGGCAATGTTTGAGAAGGCAGAAGATGAGTACAATGATTTGATGTCCAAAAAATACATAATTGAGgt----gattttcaatctatttccacattttctaactttcttgtataaatgcttaatctatttattttttcctag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G62410.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgt---ttgtagctctcaatctgttgacatgttgtcatactatgattttac---ttatgataatatgcctttaatag------------
| |||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| | ||||| || |||| | || ||||| || || || | ||| | | || || || |||| | ||| |
CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATACAATGCTCTGATATCGAAAAAAAATACTATCGAGgttagttacagaggacagagggcctttgcaatgtatttcaatagcttcgtgtgccatcataacacaattttttcggtttttttcctag
upper sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G47460.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgt-tgacatgttgtcata--ctatgattttacttatgataatatgcctttaatag--------------
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TCTAGAGAAAAGAGTGAACAAGAAGGTCACGGCTATGTTTGAGAAAGCTGAAGATGAATATAATGCTCTTATGACCAAGAAAAATATAATCGAGgttagttttggagggtctgtgcaacatagtttaaaaagcttaaaacacatttacga-actatgtttttttttttttcattttcttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122692151|gb|EC993608.1|EC993608EST: AAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAG AATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAG
genomic: AAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagct ... cctttaatagAATGACAAGTCAAAAATCAAGATGGTGATTGAAGAGCTGGATGAAAAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGATGAGTACAATGAATTAATATCCAAGAAAAGCATAATTGAGgtttgtagctctcaatctgttgacatgttgtcatactatgattttacttatgataatatgcctttaatag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA