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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCCTGGATATGTTCCAAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTTCTTCATCAATGGTCCGACCATTGAGGGTTGTACGAGGAACCTTTCAAgtaagttttatgtacccaaaccattacacccattcttattttttggacccaaactctgataggctaagctttgttctagctgggagtttggccttcaatc...

Basic information

species Vitis vinifera
transcript Vv15s0048g01650.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os04g46894.1 (Oryza sativa), 5'ss of exon 15
TGCCCCTGGATATGTTCCAAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTTCTTCATCAATGGTCCGACCATTGAGGGTTGTACGAGGAACCTTTCAAgtaagt--tttatgtac-ccaaaccattacac--ccattcttattttttggacccaaactctgataggctaagctttgttctagctgggagtttggccttcaatc
||| ||||||||||| || |||||   |||||| |||||| || |||||||| | || || ||||| ||||||||||  |||||||||||||| || |||||||||  || || |   | |||   | |     ||||    | || ||  |   |||   | | |   | | ||||  | |   |   | || |  | |     
TGCACCTGGATATGTGCCTAGTGATGCTGATGAGAGAATTATTGTTGAGCTTCCATCGTCGATGGTGCGACCATTGAAAGTTGTACGAGGAACATTCCAAgtaagtaattgatatttactaaattttgatggtgccatgaccagttcttaaaaaaaaataatcagaaagtgaactttaattttattacaacttggctcat-----

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT2G45540.2 (Arabidopsis thaliana), 5'ss of exon 17
TGCCCCTGGATATGTTCCAAGTGAACTTGATGAAAGAATTGTTCTTGAGCTTTCTTCATCAATGGTCCGACCATTGAGGGTTGTACGAGGAACCTTTCAAgtaagttttatgtacccaaaccattacacccattcttattttttggacccaaactctgataggctaagctttgttctagctgggagtttggcc--ttcaatc
 || ||||| | |||||| ||||||||||||||||| ||  ||||||| ||| |  |||| |||||||| ||| | ||||||||   |||||||||||||||| |||  |   |||  ||   ||       |    |  |     ||   ||    || |||  ||  |   |   | |    || || |     |   | 
AGCACCTGGCTTTGTTCCCAGTGAACTTGATGAAAGGATCCTTCTTGAACTTCCAACATCTATGGTCCGGCCACTAAGGGTTGTGAAAGGAACCTTTCAAgtatgttagaccaacctgaatgttttggattttctacaagtagctaacatgaaaa--gagaggaaaaattggatataatcaactagattagttagattggtt