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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag

Basic information

species Vitis vinifera
transcript Vv15s0046g03390.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 18
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
||| |||||  ||||||| |||||||| |||||||| ||||| ||||| || |||||||| ||||||||  |||| ||||| || ||||| ||||||||||||      | | |   |  |    || | | |  | ||||    |     | ||  | ||    || |  || |     |   |||||   |     | |||    |                                                                                        
TGTCTGGGCTTTGAGCAAATATTTTCCAAATGTGAAGACATTCGTCCGAGCGCATGATGTGGATCATGGTGTTAACTTGGAGAAAGCTGGTGCAACAGCGgta------agtatgtgtaacaaagttgtgtgcaatgatttcagcagtgtctaggagtctaggtgatgacatactcctggt--gcaacttgaatggacattactccat----------------------------------------------------------------------------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 17
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
 |||||||| ||||||||| | || || || ||||| || |||||||||||||||||||||||||||||  | ||||| ||||||||||| || || || |||  |||       || |  | ||||||||| || ||| || |||   | |       ||| | || | ||    |   | |     |||||| ||  ||    |||     |  ||| | | |||   || |     |    |||  ||| | |     |||  |||| |||                      
AGTTTGGGCTCTGAGCAAGCACTTCCCAAACGTGAAGACTTTTGTCCGTGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACCGCTgtaatatt-------ctattaccttttctattatg-aatgttatgattgcct-------tatggtataattttggaagtgtttttctttactaatacatatttagatttagccaaaatactctgttaatcttctctgtcttatctctttatctctctgcctcttgcattt-gcag---------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 25
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
 ||||||||  |||||||||| || || |||||||| || ||||| ||||| |||||||||||||||||  | ||||| ||||||||||| || || || |||  |||     |  |  |  ||||  | |||     ||  ||| |   | |  || || |   ||||  |  |   | |    || | |  |  | ||   ||                                                                                           
-GTTTGGGCTTTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGATGTTGATCATGGATTAAATTTAGAAAAGGCTGGAGCTACTGCTGtaatatt----ctcatacctattttagtgttccccgtttgattggctgatggtacaatt-tcaaatta-ctggtagcatttggtaaatgc--attcaaacgtctgaag---------------------------------------------------------------------------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 21
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcatt---aattttactttccctttttctattctgtaattttttgac-ctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
 ||||||||  | |||||||| || || |||||||| || ||||| ||||| ||||| |||||||||||  | ||||| ||||||||||| || || || |||  |||   |    || | |  | ||  |  ||   | |  |  ||   |  ||    | |  | | |  | ||  | || |  | |||  |    ||                                                                                                    
AGTTTGGGCTTTAAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTgtaatattctcatacctattctagcgttccccgtttgattacctgatggtacaatttcaaaatagtggtagcatttggtaaacacattcaagcatctgaa----------------------------------------------------------------------------------------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 18
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacct-cttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
|||||||||  ||||||||| ||  |||||||| ||||| |||||||||||||| ||||||| |||||| |||||| | ||||| || || || || || |||  | |      ||   ||| ||  || |  | ||   | | ||  | ||| | || |  |  || || | ||     | || | |  || ||||||  ||                                                                                              
TGTTTGGGCTTTGAGCAAGTTTTACCCCAATGTCAAAACTTTTGTCCGTGCTCACGATGTTGTTCATGGTCTTAATCTAGAAAAAGCCGGTGCTACTGCAgtaatact-----cacagaccccttcactctcatctagactatagatatgctttgtcaatcgt-acactaataat-----acct-cgatcacaaaaacttttag---------------------------------------------------------------------------------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 17
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||| | ||||| || || || || || |||  |        |  ||  || ||    |||||| |||     || | ||     |  | ||  | |  | | || |  | | ||||  | |                                                                                                      
TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaataacttccacaacttttctattctccttctgtcattgcacaacattttcaaagtaaactgattaaaatctcgata--caaaaactcgttag-----------------------------------------------------------------------------------------------------

upper sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S2_217V6.1 (Physcomitrella patens), 5'ss of exon 20
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcat-taattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag
 || |||||  | |||||||| | |||  ||||||| || ||||| |||||||||||||| ||||||||  | | |||||| |||||||| ||||| |||||||  | |   |          ||  |||| | |  | | |  | |  | |||   ||  ||||||  |   |||  |  | |  |||     |     |||  |                                                                                           
GGTGTGGGCTTTAAGCAAGTACTATCCTCATGTGAAGACGTTTGTGCGTGCTCATGATGTGGATCATGGAATGAGTTTGGAGAAGGCTGGAGCAACTGCGgtatgttctggctccgaagggttttggtctagt-taaagtatcattatgtgttgcatatg-attgcaaga---attagaggtgtg-aacagtggagcactataggt-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045387|gb|FQ447652.1|FQ447652
EST:     CTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCG                         GTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTT
genomic: CTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaa ... aaacatacagGTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTT
EST: gi|110407685|gb|EC973295.1|EC973295
EST:     GAAAAGGCTGGGGCAACAGCG                         GTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTT
genomic: GAAAAGGCTGGGGCAACAGCGgtatcattaa ... aaacatacagGTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTT
EST: gi|110425477|gb|EC991862.1|EC991862
EST:     CTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCG                         GTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCAGCTGCTGTTCTT
genomic: CTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaa ... aaacatacagGTTGTTCCAGAGACCTTGGAACCAAGTCTGCAGTTAGCTGCTGCTGTTCTT