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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGCATAGAGGTGGCCATCTTCGTGTCTCCTTAGCAAAGATGGCATTGAAGAATCTGCTTCTTACGAATTTGGACCTGTTTCCTGCTTGCATTGATCAGgtatttttatccttattttctcatttttgcaacggctttttagtcagtgtgggtctgattcatgaccagtaatttgatgggatgattatttgtgcactag...

Basic information

species Vitis vinifera
transcript Vv14s0083g00750.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os02g58410.1 (Oryza sativa), 5'ss of exon 16
TAGGCATAGAGGTGGCCATCTTCGTGTCTCCTTAGCAAAGATGGCATTGAAGAATCTGCTTCTTACGAATTTGGACCTGTTTCCTGCTTGCATTGATCAGgtatttttatccttattttctcatttttgcaacggctttttagtcagtgtgggtctgattcatgaccagtaatttgatgggatgattatttgtgcactag--
 |  || | |  | | ||  | || ||    |||||||| |  |||||||||||| |  | |  || |||||||| ||||||||||||||||| |||||||||  ||| | ||| || | | |      ||||   |||    |   | |   |   ||| |  | || |  ||| ||    |  | ||     |  |    
CAAACAGAAAACTAGTCACTTGCGAGTTCTGTTAGCAAAAACTGCATTGAAGAATATTTTACAGACAAATTTGGATCTGTTTCCTGCTTGCATAGATCAGgtaagttt-tgcttcttctatgaacaagccaacta-tttgcgttgtatttatattacattgaatagcatttgtttaattaattactcatggtgacttttctt

upper sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G15680.1 (Arabidopsis thaliana), 5'ss of exon 17
TAGGCATAGAGGTGGCCATCTTCGTGTCTCCTTAGCAAAGATGGCATTGAAGAATCTGCTTCTTACGAATTTGGACCTGTTTCCTGCTTGCATTGATCAGgtatttttatccttattttctcatttttgcaacggctttttagtcagtgtgggtctgattcatgaccagtaatttgatgggatgattatttgtgcactag-----
||||||||||||||| ||||  |||||  | || |||||  ||||  |||||||||| || ||||| || ||||| || |||||||| ||||||||||||||| | || |   |   |    ||   || ||    | |||| | |   ||  ||   ||  | |  | ||  |     |  |||| | |  || || |      
TAGGCATAGAGGTGGTCATCAACGTGTTGCGTTGGCAAAATTGGCCCTGAAGAATCTTCTACTTACAAACTTGGATCTCTTTCCTGCCTGCATTGATCAGgtaatgttctatctgactga--atgcatggaagttgtgtttaattatactg--tcgtcttggtaattactaggtcagatgtttgataaatcttg-accaatgatg