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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtacatatttttcattagcttgtccagcataggtgttgaaaaacttgagttttcagctcaaactccaatctcacatcatcctgttagaggctaata...

Basic information

species Vitis vinifera
transcript Vv14s0030g00570.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 15
ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtacatatttttcattagcttgtccagcataggtgttgaaaaacttgagt-tttcagctc----aaactccaatctcacatcatcctgttagaggctaata-----------------------
 | || ||||||||||| ||  ||||||| ||||||||||| || |||||||| || |||||||| || || ||||| || ||||| ||||| |   || |||||   ||  |  | |  ||  |  || |  |  |  |     | |  | |||  || |    ||  |     ||||  |||| |  ||  | | |||                         
GTGCTGGATGCTGATAATGGGCGTCGGTTGGAGAGTTCTACTGGTCGTGTAGCTACACGAGATATGGTGCAATTTGTGCCTATGAGAGAAGTACAAAgtaagtaccagttgcttctcaaattaacttgcttgtgattcaattcgttagcctattttggcccctccaagttttgtactcatttcattccatttaaagttaaatgcaccctcatgtgtttttgacag

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 15
ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtaca---tatttttca--ttagcttgtccagcataggtgttgaaaaacttgagttttcagctcaaact------ccaatctcacatcatcctgttagaggctaata-----------------------
 | || ||||||||||| ||  ||| ||| ||||||||||| || |||||||| ||  ||||||| ||||| ||||| || ||||| ||||| |   || |||||    |  | ||||  ||| |||||    | |     | |  |  ||| |  |  |  |||||| |      |  || |||  |||| |  || || | |||                         
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagcctt-atctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtac-atatttttcat-tagcttgtccagcatag-gtgttgaaaaacttgagttttcagctcaaactcca-atctcacatcatcctgttagaggctaata
|| |||||||||||||| ||| | ||||||||||||||||| || ||  |||| || || || || || || ||||| || ||||  ||  | | | ||||||   | |||  | || ||    |   ||  ||  ||||| | |    || |||||    |   | |  |  | | |  |  |   |||  ||       
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttaga----tgcgttttggattggtagtaaatgtttaatttggtggggttgcag-------