Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgttacttttttcctctgatgcaattttattttcactattcatcatttttttttcagttccataacatttcttgttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 16
AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgtt------acttttttcctctgatgcaattttattttcactattcatcatttttttttcagttccataacatttcttgttttacag
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AGAAATCTGATCCGTGAAGCGACTGCTTTCCTTCTGGATGTTCTGAAGCCAAATTTACCCGAGCATGCTTTTCTGCAAACTAAGgttgaaaagagttgccaccttttacttctctgtgctttccctactcaccttcctttcttagaccttttagtgcactct-caacacag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 16
AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgtt----acttttttcctctgatgcaatt---ttattttcactattcatcatttttttttcagttccataacatttcttgttttacag
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AGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAGgttgaaaatagttgccaccttgtatctctccgtttttttctctactcaccttctttccccagactgtttaaatcatttttcaacacag
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ24508 (Selaginella moellendorffii), 5'ss of exon 16
AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgttacttttttcctctgatgcaattttattttcactattcatcatttttttttcagttccataacatttcttgttttacag
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CGAAACTTGATACGTGAAGCAACATCCTTTTTACTGGATGTTTTGAAGCCGAACCTTCCCGAGCATGCGATGTTGCAGACAAAGgtt---ttattcgttaacttaaattttgttt--ggtatt--ttatcccgtcttcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689653|gb|EC942290.1|EC942290EST: TAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG GTCCTGGAAATCAATCTGGTAACTTACCCAAATGTTGCAGATGCTATATTA
genomic: TAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgttacttttt ... tgttttacagGTCCTGGAAATCAATCTGGTAACTTACCCAAATGTTGCAGATGCTATATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAGgttacttttttcctctgatgcaattttattttcactattcatcatttttttttcagttccataacatttcttgttttacag
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC