Sequence
atgc intronic sequence ATGC exonic sequenceGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgcccttaataattaagcacttctatttacttgcaaagtttaataatgaagttaaaacagatttttattaactaagtgattatgaatttattgtgctccatgttgagtcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G35210.2 (Glycine max), 5'ss of exon 16
GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgcccttaataattaagcacttctatttacttgcaaagtttaataatgaagttaaaacagatttttattaactaagtgattatgaatttattgtgctccatgttgagtcttgcag
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GAGAGAACTACTCCACAGCTATGGATTTGAGCACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGgt---------ataatgcagtaggt--gtttagttgcaaa---------tgcaaatggattatgtgttcgttatttaa-taatta-actcttgttgtgc---atgt-gatccttttag
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G54860.1 (Arabidopsis thaliana), 5'ss of exon 16
GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgcccttaataattaagcacttctatttacttgcaaagtttaataatgaagttaaaacagatttttat-taactaagtgattatga--atttattgtgctccatgttgagtcttgcag
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AATGGAACTACTCCACAGTTATGGGTTTGAGCATGTGGTTACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGCAGgtttg------gtgatt------cttggtttccttttagaattgaatcattttcttatattctatggtgaggtacgtctgacattctaatgtcttggtgtaccttcgtttggttcctgcag
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S26_105V6.1 (Physcomitrella patens), 5'ss of exon 16
GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgcccttaataattaagcacttctatttacttgcaaagtttaataatgaagt-taaaacagatttttattaactaagtgattatgaatt-tattgt--gctccatgttg--agtcttgcag
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GAGAGAACTTTTGCATAGCTATGGATTTGAGCACATGTTTACTCTAAGCAATTTAGAGAAAGCTGGCTTGCTCATAAAACAAgtatgttccggctgtttc--tacttat-tctgcgaatcctttatgacaatagcgcgtaatattacagtgtatcgaataaaccatggcataccctaacgaaggtttcaaaatgccaatgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30132609|gb|CB917948.1|CB917948EST: ACATGGCTACGCTGAACAATTTAGAANAGGCTGGATTGCTTANAANACAG GAGACCAAAAGCAATTGGTTGACTATCANACGTGCTCTGCAACTTTGTGGT
genomic: ACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgccctt ... agtcttgcagGAGACCAAAAGCAATTGGTTGACTATCAAACGTGCTCTGCAACTT-GTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAGgtttgcccttaataattaagcacttctatttacttgcaaagtttaataatgaagttaaaacagatttttattaactaagtgattatgaatttattgtgctccatgttgagtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA