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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTCCGAGAATATGGAGAGGCAGTGCTGAAACTCTTGGAGAATTTGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttctctacacacatgtgatttttgagttgattaacatttaatgttcatccattcataactgtagtatcttcttgaaattagcacttctagcctc...

Basic information

species Vitis vinifera
transcript Vv13s0019g04370.t01
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715514|gb|EE093651.1|EE093651
EST:     TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA                         GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
genomic: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
EST: gi|110364954|gb|EC928584.1|EC928584
EST:     CTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA                         GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
genomic: CTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
EST: gi|30298937|gb|CB975731.1|CB975731
EST:     TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA                         GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
genomic: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT