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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaaatgactcttcctcacatttaatgtgttgtgttggttctaggtgactgaacttgctattattgtggttaaacag

Basic information

species Vitis vinifera
transcript Vv12s0028g02640.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 16
ACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaaatgactcttcctcacatttaatgtgttgtgttggttctaggtgactgaacttgctattattgtggttaaacag
 | |||||||| ||||||||||| |||||||| || |||||||||||||||||||| || |     ||||  |   | |  | ||||| | |       |||||     ||| |||   |   || |    |||
GCGTATGATGGAATGATTGTTGGAGAACATTCACGCGATACAGATCTTGATgtaagaagta----ttcttagtttgaatgtaagtgttatatcaa----aggtggt--gactcgctgacagactgatatttcag

upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G14080.1 (Glycine max), 5'ss of exon 16
ACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaaatgactcttcctcacatttaatgtgttgtgttggttctaggtgactgaacttgctattattgtggttaaacag
 | |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||   ||||     |  ||   ||  ||| |||| | |      | ||||||| | ||  | |  | ||   ||  |   
GCGTATGATGGAATGATAGTTGGAGAACATTCACGGGATACAGATCTTGATgtaag---aaatattcttagcttgaatcaaat-tgttatatcaaagtt-ggtgactca-ctgacgaagactgatatttcag--

upper sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 15
ACTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaaatgactcttcctca-cat-ttaatgtgttgtgttggttctaggtgactgaacttgctattattgtggttaaacag
 | |||||||| |||||| | ||||| ||||| || || |||||||||||||||||       ||||  |||||  |||  |||  ||| |   ||     || | |||   | |   | |   |           
TCATATGATGGTATGATTATCGGTGAGCATTCACGAGAAACAGATCTTGATgtaagtttgttcgacttctcctcttcatactaaattgtcgaaatgccatgagctcacttgcccttgcactgcag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189995|gb|CF609344.1|CF609344
EST:     CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGAT                         ATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG
genomic: CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaa ... ggttaaacagATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG
EST: gi|110366463|gb|EC930369.1|EC930369
EST:     CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGAT                         ATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG
genomic: CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaa ... ggttaaacagATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG
EST: gi|34320217|gb|CF372971.1|CF372971
EST:     CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGAT                         ATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG
genomic: CTTATGATGGCATGATTGTTGGTGAACATTCCCGGGATACAGATCTTGATgtaaggagaa ... ggttaaacagATCAACCCAGTAAGGGCTAAGGAACTTACCAATATACGCGCTGCTTCCAAG