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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagtatattctgattatgagattgtaacctatagctgttgtttcatgaatgcag

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagt-atattctgattatgagattgtaacctatagctgttgtttcatgaatgcag
||| || ||||||||||||||||||||| | |||||| | || || ||||||||||| |||||||| || || || || |||||    ||   |||    |    | ||  || |   | | | | |  |  ||| |    | ||||  |  ||| || | || |     ||  |||  |||| | |   || |  |  ||     |||
CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtat----gtgcgcatgcctttagctcctgaaagtcacattatgcct--gaaattctt---gtttgatttcgatttgtgacatac-----ataggat-ataacatttcaatgcttatatatatggacag

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 15
CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagtatattctgattatg-agattgtaacctatagctgttgtttcatgaatgcag
 |||||||||||||| || ||||||||  ||||||| || ||||| ||||||||||| |||||||| || |||||| |||||||          || || |   |   |  |    | |  |   ||||  |||   | |  | |||  | |  ||  |||     |  ||| |  ||||||  |  ||||||| || |     |||||
TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtat--------gtatgaattctctcatttaataaatcatgtaaattttaacat---agaaacatgaactgaggtaacataccacaagaatggaagttgtaatatgaagctgttattac-----tgcag

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
--------------------CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagtatattctgattatgagattgtaacctatagctgttgtttcatgaatgcag
                     |||||||| |||||||| ||||||||| | ||||||||||| || || |||||||| |||||||||||  |||||| ||||| |  | || |  | | ||   ||      ||| |||        |  |||  || | |  |  ||| || ||     |||||  | |                                      
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttt-tcaatttcagctctctt-----gattgttaacacctcctaaccagatt-ctgattgaaca-aagttctctcattctcttaacag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031975|gb|FQ460232.1|FQ460232
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|351032492|gb|FQ458857.1|FQ458857
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|349809734|gb|FQ398359.1|FQ398359
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|349811710|gb|FQ409707.1|FQ409707
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACGGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|349812955|gb|FQ411195.1|FQ411195
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|351032512|gb|FQ458877.1|FQ458877
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|22015436|gb|BQ800470.1|BQ800470
EST:     GAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: GAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|352786892|gb|FQ481267.1|FQ481267
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|349820047|gb|FQ404769.1|FQ404769
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
EST: gi|29784962|gb|CB341547.2|CB341547
EST:     CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG                         GTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA
genomic: CAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgt ... atgaatgcagGTTGGGACACAGATCAGTTCCTTACAGATATAGCTGAGGCAACCATGGTTA