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GAATGGCTTTGTTGAATCTGGTGCGCTCTCAGAGCTGATTGTTGCTTTCTCACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggactctcatttctcagaagggccattcatctgaagtttttgtttttgatatatatatatatatgtattattgtccatttgtttgagatgctaagtgcatgtttgctttatatctag
species | Vitis vinifera |
transcript | Vv11s0052g00880.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|32270252|gb|CD719411.1|CD719411
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|56409444|gb|CX017696.1|CX017696
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CATGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GTGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|30324587|gb|CD007849.1|CD007849
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|30326071|gb|CD009333.1|CD009333
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|352774216|gb|FQ474739.1|FQ474739
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|110699884|gb|EE077290.1|EE077290
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|30322494|gb|CD005756.1|CD005756
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGTEST: gi|32271899|gb|CD721058.1|CD721058
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
EST: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAG GCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
genomic: CACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggact ... ttatatctagGCGTCGGATATTTGGAATGTAATTTCTCAGGGAGGCTACATTTATGTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGCTTTGTTGAATCTGGTGCGCTCTCAGAGCTGATTGTTGCTTTCTCACGTGAAGGACCCACCAAGGAATATGTACAGCATAAGATGATGGAGAAGgtacgggactctcatttctcagaagggccattcatctgaagtttttgtttttgatatatatatatatatgtattattgtccatttgtttgagatgctaagtgcatgtttgctttatatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA