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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04180.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| ||||| |||| ||||||||| || |||||||| ||||| |||||||| || | |||||| || ||||||||||| ||||| || || ||||| |    ||||  |       | ||||   || | ||  | || | ||| ||||    | || | |  ||| ||   |  |||||
GTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAAgtgtgttttcttgataa------tactgcctgcttattg--tctggtgttg-aatt--cttgaactaacatatttttcttgttgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 17
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgag-ggagcttgggagctgcacttctg-caatctgactgcttttgttcttgtaat-tgatctaaatttatttatgttatcttatgcag
|| || || |||||||||||||| |||||||||||||| |||||||||||||| |  |||||||| || |||||||| ||||| || ||||||| ||  |      | |     |||||||    ||| ||    | |||| |||   | |||    ||||| |||||   |          
GTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAAgtaagcagcatgcagcatacctacttctgatcttcttacatgatgtgtttttgggttatgacaacaatttttttattacag---------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 16
---GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgaggg-agcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
   || || ||  ||||||||||||| ||||| |||||||| |||||||||||||| |  ||||| || || |||||||| || ||  | ||||||||||   | ||| |   ||  | | |      ||    | |||||| |      |   |      | || ||  ||||  | |||||
CAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttcatctttgttactaaattcca-----cttgtagtttttgtacacaagttctgt---ggctaatgtaccttattat-tgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgaggg-agcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || ||  ||||||||||||| ||||| |||||||| |||||||||||||| |  ||||| || || |||||||| || ||  | ||||||||||   | ||| |   ||  | | |      ||    | |||||| |      |   |      | || ||  ||||  | |||||
GTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttcatctttgttactaaattcca-----cttgtagtttttgtacacaagttctgt---ggctaatgtaccttattat-tgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G095348_T01 (Zea mays), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || || |||| ||| ||||| || ||||||||  | || ||||||||||| |  |||||||| ||||||||||| ||||| ||||||||||| |    ||    | |     |||     | |     | | || | ||  ||||  | | |  | |  |||      | || |||
GTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAAgtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgtt--aatttctgtga-ctaacatataa-gcttgatacag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || || |||| ||| ||||| || |||||||| ||||| |||||| |||| |  |||||||| ||||||||||| ||||| ||||| ||||  |    || |  | |    ||||       |    || | ||||  | |   |||   | |  ||  | || ||          
GTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgttttctcgaaaacaatgcttcctttcctttgtagcatctgttaatttctctgactaacaaatagct-tggtacag-------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G086015_T01 (Zea mays), 5'ss of exon 1
--------GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
        || || || |||| ||| ||||| || ||||||||  |||| |||||| |||| |  |||||||| ||||||||||| ||||| ||||| ||||  |    || |  | |    ||||       |    || | ||||  | |   |||   | |  ||  | || ||          
ACTTACAGGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgttttctcgaaaacaatgcttcctttcctttgtagcatctgttaatttctctgactaacaaatagct-tggtacag-------

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || ||| | ||||||||||| ||||| ||||||||  ||||||||||||| |  ||||| || || |||||||| || ||  | ||||||||||     |||  | ||      |   ||| | |||  |  | ||  |  |   | |||     || |    || | |  |||||
GTTACAACCTTATTTCACTTGGATCGGCCAATGTATTTACTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgag-----ttg--atctttgtcacctaaatttcacttgtagtttttgtacacaagttctgtggctaatgtacttttttattgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaa---tctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
||||| || |||||||| |||||||| |||||||| ||||| ||||||||||| |  |||||||| |||||| | || |||||||||||||||| || ||   |      || | |  |  ||   |   | |||  |  |  |    |||  |||   |||||  ||  | | ||   |||
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctg--tttatcaat--tgtttttctcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttat--gttatcttatgcag
||||| || |||||||| |||||||| || ||||| ||||| ||||||||||| |  |||||||| |||||| | || |||||||||||||||| || ||   |      || | |  |  ||  |      |   ||  |  | | |  | |   | | |||||   || | ||   |||
GTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcagtaatcttgactacttt---tctgtttatcaattttttttctcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 5
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || || |||||||| |||||||| |||||||| ||||| |||||||||||||| ||||||   || ||| | ||||||||||| || |||| || |       |   |||| |  |  ||         |   ||  |  | |||  | |   | | |||    | | |||  |||
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAAgtaagtggatcaatggtttgcattattcaaaatctctcaatgcagtggtcctgattttttttcttcttttttaactgtgttactcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag
|| || || |||||||| |||||||| |||||||| ||||| |||||||||||||| ||||||   || ||| | || |||||||| || |||| || |       |   |||| |     | ||  | |   |   |    | | |    || | | | |||    | | |||  |||
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAAgtaagtggatcaatggtttgcatt-----attcaaaatatctcaat----gcagtaatcctgattattttttaactgttttactcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatctt-atgcag
|||||||| |||| ||| |||||||| || ||||||||||| ||||||||||| ||||||||||| ||||   |  |||||||||| || |||| || |    |  ||  ||    | |  |   | | ||   ||||||| | | ||  |     | |     |||| | |  ||||||
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAAgtaagtg---cttagatttgtgtgtttata---taattgagattgttctagaagtttctgatgctgttcccctgttttgtggatgcag

upper sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatctt---atgcag
|||||||| |||| ||| |||||||| || |||||||||||||| ||| ||||||  ||||| || |||||  |  |||||||||| || |||| | |   |||   |  ||    | ||  | |||  |  | |||      |||||     | || | |   | ||   |    ||||||
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAAgt-acgttcctttatatatgtttatttgaga-ctgttttatcttgcatacataatttgctaacatatttccctttttcttgggaatgcag